RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 DOLKQ9UPQ8 538 aa12.21□□□□□ -0.45
SHROOM3-201ENST00000296043 LIN7AO14910 233 aaPredicted RBP12.21□□□□□ -0.45
SHROOM3-201ENST00000296043 FXR1P51114 621 aaKnown RBP eCLIP12.21□□□□□ -0.45
SHROOM3-201ENST00000296043 RNF220Q5VTB9 566 aa12.21□□□□□ -0.45
SHROOM3-201ENST00000296043 PKN3Q6P5Z2 889 aa12.21□□□□□ -0.45
SHROOM3-201ENST00000296043 MROH7-TTC4A0A0A0MT08 1334 aa12.21□□□□□ -0.45
SHROOM3-201ENST00000296043 SMIM31A0A1B0GVY4 71 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 F8W8V4 182 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 FCER1AP12319 257 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 BCAMP50895 628 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 QPRTQ15274 297 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 PARP8Q8N3A8 854 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 YEATS2Q9ULM3 1422 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 PRR23AA6NEV1 266 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 ZNF233A6NK53 670 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 BIRC5O15392 142 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 PLEKP08567 350 aaPredicted RBP12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 FCGR1AP12314 374 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 THUMPD3Q9BV44 507 aaKnown RBP12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 BAIAP2Q9UQB8 552 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 KNL1Q8NG31 2342 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 AVPR1AP37288 418 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 CASP4P49662 377 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 ARHGEF12Q9NZN5 1544 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 MAGEB5Q9BZ81 275 aa12.21□□□□□ -0.46
SHROOM3-201ENST00000296043 VIRMAQ69YN4 1812 aaKnown RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 ITIH2P19823 946 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 TBCELQ5QJ74 424 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 SLC30A5Q8TAD4 765 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 CDHR1Q96JP9 859 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 UVRAGQ9P2Y5 699 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 AKT3Q9Y243 479 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 TDRKHQ9Y2W6 561 aaKnown RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 KIF1BO60333 1816 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 KCNQ4P56696 695 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 RPS7P62081 194 aaKnown RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 MZT2BQ6NZ67 158 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 SCFD1Q8WVM8 642 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 KIAA1683Q9H0B3 1180 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 ZNF446Q9NWS9 450 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 GGA2Q9UJY4 613 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 ING4Q9UNL4 249 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 IQGAP2Q13576 1575 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 M0QYV0 167 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 GYPCP04921 128 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 ZNF37AP17032 561 aaPredicted RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 ACTR2P61160 394 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 NR1I3Q14994 352 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 NAB2Q15742 525 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 SMU1Q2TAY7 513 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 LRRC71Q8N4P6 559 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 RIBC2Q9H4K1 309 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 DHX35Q9H5Z1 703 aaKnown RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 TIMMDC1Q9NPL8 285 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 AVENQ9NQS1 362 aaPredicted RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 SLC39A10Q9ULF5 831 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 ADGBQ8N7X0 1667 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 A0A0G2JPF8 293 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 HNRNPCL3B7ZW38 293 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 TFECO14948 347 aaPredicted RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 HNRNPCL4P0DMR1 293 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 TRIM32Q13049 653 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 TRADDQ15628 312 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 LSM14AQ8ND56 463 aaKnown RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 SEPHS2Q99611 448 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 PPCSQ9HAB8 311 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 SH3TC1Q8TE82 1336 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 USP12O75317 370 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 SERPINB9P50453 376 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 EGFLAMQ63HQ2 1017 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 JADE3Q92613 823 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 HDAC2Q92769 488 aaKnown RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 COA7Q96BR5 231 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 COPS7BQ9H9Q2 264 aaPredicted RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 MRPL11Q9Y3B7 192 aaKnown RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 NUP160Q12769 1436 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 PNMA8CA0A1B0GUJ8 204 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 TLR2O60603 784 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 ITPRIPL1Q6GPH6 555 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 WDR36Q8NI36 951 aaKnown RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 RNF139Q8WU17 664 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 ZNF221Q9UK13 617 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 DIDO1Q9BTC0 2240 aaKnown RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 PFASO15067 1338 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 INO80B-WBP1J3KQ70 363 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 HS6ST1O60243 411 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 THRAP10827 490 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 KCTD1Q719H9 257 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 CCDC33Q8N5R6 958 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 UTP15Q8TED0 518 aaKnown RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 AGAP3Q96P47 875 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 INO80BQ9C086 356 aaPredicted RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 ATP6V1C1P21283 382 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 EZH2Q15910 746 aaKnown RBP12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 EPHX4Q8IUS5 362 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 SGF29Q96ES7 293 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 KANSL2Q9H9L4 492 aa12.2□□□□□ -0.46
SHROOM3-201ENST00000296043 USP10Q14694 798 aaKnown RBP12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 ZNF699Q32M78 642 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms