RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 C12orf50Q8NA57 414 aaPredicted RBP17.52■□□□□ 0.39
VPS54-201ENST00000272322 RSAD2Q8WXG1 361 aa17.52■□□□□ 0.39
VPS54-201ENST00000272322 RMDN2Q96LZ7 410 aa17.52■□□□□ 0.39
VPS54-201ENST00000272322 CCDC77Q9BR77 488 aa17.52■□□□□ 0.39
VPS54-201ENST00000272322 FAM49AQ9H0Q0 323 aaPredicted RBP17.52■□□□□ 0.39
VPS54-201ENST00000272322 STMN4Q9H169 189 aaPredicted RBP17.52■□□□□ 0.39
VPS54-201ENST00000272322 ZNF112Q9UJU3 913 aa17.52■□□□□ 0.39
VPS54-201ENST00000272322 ZNFX1Q9P2E3 1918 aaKnown RBP17.51■□□□□ 0.39
VPS54-201ENST00000272322 POLR2AP24928 1970 aaKnown RBP17.51■□□□□ 0.39
VPS54-201ENST00000272322 ERFP50548 548 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 TFDP1Q14186 410 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 KCTD2Q14681 263 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 PLCB4Q15147 1175 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 ZNF667Q5HYK9 610 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 MIS12Q9H081 205 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 SDCBP2Q9H190 292 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 RPF1Q9H9Y2 349 aaKnown RBP17.51■□□□□ 0.39
VPS54-201ENST00000272322 NGRNQ9NPE2 291 aaKnown RBP17.51■□□□□ 0.39
VPS54-201ENST00000272322 L3MBTL1Q9Y468 752 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 SYNJ2BP-COX16A0A087WUM0 186 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 MAFO75444 373 aaPredicted RBP17.51■□□□□ 0.39
VPS54-201ENST00000272322 FOXN2P32314 431 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 OVGP1Q12889 678 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 SGSM1Q2NKQ1 1148 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 MSS51Q4VC12 460 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 METTL7BQ6UX53 244 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 PHF13Q86YI8 300 aaPredicted RBP17.51■□□□□ 0.39
VPS54-201ENST00000272322 KATNAL2Q8IYT4 538 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 CCDC63Q8NA47 563 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 ANKRD36BP1Q96IX9 119 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 TACO1Q9BSH4 297 aaKnown RBP17.51■□□□□ 0.39
VPS54-201ENST00000272322 COX16Q9P0S2 106 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 LAMA2P24043 3122 aaKnown RBP17.51■□□□□ 0.39
VPS54-201ENST00000272322 LACTBL1A8MY62 500 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 PSTPIP1O43586 416 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 GBP1P32455 592 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 RTP1P59025 263 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 OR6B2Q6IFH4 312 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 SESTD1Q86VW0 696 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 SPATS2Q86XZ4 545 aaKnown RBP17.51■□□□□ 0.39
VPS54-201ENST00000272322 UNC45BQ8IWX7 931 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 CNPY4Q8N129 248 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 MAIP1Q8WWC4 291 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 TRIM56Q9BRZ2 755 aaKnown RBP17.51■□□□□ 0.39
VPS54-201ENST00000272322 GINM1Q9NU53 330 aa17.51■□□□□ 0.39
VPS54-201ENST00000272322 PIH1D1Q9NWS0 290 aaKnown RBP17.51■□□□□ 0.39
VPS54-201ENST00000272322 ADGRA2Q96PE1 1338 aa17.5■□□□□ 0.39
VPS54-201ENST00000272322 HOXC6P09630 235 aa17.5■□□□□ 0.39
VPS54-201ENST00000272322 POLR2BP30876 1174 aaKnown RBP17.5■□□□□ 0.39
VPS54-201ENST00000272322 CTCFP49711 727 aaPredicted RBP17.5■□□□□ 0.39
VPS54-201ENST00000272322 OAZ1P54368 228 aa17.5■□□□□ 0.39
VPS54-201ENST00000272322 PPP6R3Q5H9R7 873 aaPredicted RBP17.5■□□□□ 0.39
VPS54-201ENST00000272322 JADE1Q6IE81 842 aa17.5■□□□□ 0.39
VPS54-201ENST00000272322 ZNF449Q6P9G9 518 aa17.5■□□□□ 0.39
VPS54-201ENST00000272322 PITPNM3Q9BZ71 974 aa17.5■□□□□ 0.39
VPS54-201ENST00000272322 CHMP2BQ9UQN3 213 aa17.5■□□□□ 0.39
VPS54-201ENST00000272322 SNX3O60493 162 aa17.5■□□□□ 0.39
VPS54-201ENST00000272322 PAEPP09466 180 aa17.5■□□□□ 0.39
VPS54-201ENST00000272322 RDXP35241 583 aaKnown RBP17.5■□□□□ 0.39
VPS54-201ENST00000272322 C1QBPQ07021 282 aaKnown RBP17.5■□□□□ 0.39
VPS54-201ENST00000272322 EAPPQ56P03 285 aaPredicted RBP17.5■□□□□ 0.39
VPS54-201ENST00000272322 ARFGAP1Q8N6T3 406 aa17.5■□□□□ 0.39
VPS54-201ENST00000272322 GPR20Q99678 358 aa17.5■□□□□ 0.39
VPS54-201ENST00000272322 DCTN4Q9UJW0 460 aa17.5■□□□□ 0.39
VPS54-201ENST00000272322 LRCH4O75427 683 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 ERBB2P04626 1255 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 RPA3P35244 121 aaPredicted RBP17.49■□□□□ 0.39
VPS54-201ENST00000272322 TCEAL1Q15170 157 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 TFDP3Q5H9I0 405 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 RCOR2Q8IZ40 523 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 CHST13Q8NET6 341 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 DCPSQ96C86 337 aaKnown RBP17.49■□□□□ 0.39
VPS54-201ENST00000272322 SERPINB12Q96P63 405 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 STYXL1Q9Y6J8 313 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 CDH16O75309 829 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 INSRRP14616 1297 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 TARBP2Q15633 366 aaKnown RBP17.49■□□□□ 0.39
VPS54-201ENST00000272322 C1orf127Q8N9H9 656 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 NLRP7Q8WX94 980 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 CDT1Q9H211 546 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 TRABDQ9H4I3 376 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 TPX2Q9ULW0 747 aaKnown RBP17.49■□□□□ 0.39
VPS54-201ENST00000272322 CPP00450 1065 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 CALB1P05937 261 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 ASPAP45381 313 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 WDR4P57081 412 aaKnown RBP17.49■□□□□ 0.39
VPS54-201ENST00000272322 CLDN10P78369 228 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 SLC20A2Q08357 652 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 SEPT7Q16181 437 aaKnown RBP17.49■□□□□ 0.39
VPS54-201ENST00000272322 FNBP1LQ5T0N5 605 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 C3orf62Q6ZUJ4 267 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 WDR49Q8IV35 697 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 PYROXD1Q8WU10 500 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 RBM41Q96IZ5 413 aaKnown RBP17.49■□□□□ 0.39
VPS54-201ENST00000272322 NSRP1Q9H0G5 558 aaKnown RBP17.49■□□□□ 0.39
VPS54-201ENST00000272322 EVPLQ92817 2033 aa17.49■□□□□ 0.39
VPS54-201ENST00000272322 hCG_1818297A0A087WSY0 165 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 STAG3L1P0CL83 205 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 KRT4P19013 534 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 KLRC2P26717 231 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms