RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 PARP2Q9UGN5 583 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 TRPV2Q9Y5S1 764 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 SNX9Q9Y5X1 595 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 SMIM28A0A1B0GU29 152 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 PODXLO00592 558 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 CYP3A5P20815 502 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 SKOR1P84550 965 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 CFAP58Q5T655 872 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 RPAINQ86UA6 219 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 KATNAL2Q8IYT4 538 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 TMEM130Q8N3G9 435 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 ZIM3Q96PE6 472 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 MCEEQ96PE7 176 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 APOL6Q9BWW8 343 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 DNAI2Q9GZS0 605 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 SYNCQ9H7C4 482 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 XPNPEP3Q9NQH7 507 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 TUBGCP4Q9UGJ1 667 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 HMGXB4Q9UGU5 601 aa16.18■□□□□ 0.18
SF3B4-201ENST00000271628 SIGLEC16A6NMB1 481 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 O00370 1275 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 ADAMTS4O75173 837 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 MICAL2O94851 1124 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 KRT3P12035 628 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 GPD2P43304 727 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 FNTAP49354 379 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 HLTFQ14527 1009 aaKnown RBP eCLIP16.17■□□□□ 0.18
SF3B4-201ENST00000271628 PTPN20Q4JDL3 420 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 LRRC38Q5VT99 294 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 C9orf57Q5W0N0 161 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 TWF2Q6IBS0 349 aaKnown RBP16.17■□□□□ 0.18
SF3B4-201ENST00000271628 CCDC137Q6PK04 289 aaKnown RBP16.17■□□□□ 0.18
SF3B4-201ENST00000271628 LCLAT1Q6UWP7 414 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 SESTD1Q86VW0 696 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 FAM228AQ86W67 206 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 UNC93AQ86WB7 457 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 NIPA2Q8N8Q9 360 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 C12orf50Q8NA57 414 aaPredicted RBP16.17■□□□□ 0.18
SF3B4-201ENST00000271628 ZNF560Q96MR9 790 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 FAM107BQ9H098 131 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 CHST12Q9NRB3 414 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 IPPQ9Y573 584 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 CDY2AQ9Y6F7 541 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 M0QYV0 167 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 PIRO00625 290 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 SSR1P43307 286 aaKnown RBP16.17■□□□□ 0.18
SF3B4-201ENST00000271628 GABRB2P47870 512 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 DRG2P55039 364 aaKnown RBP16.17■□□□□ 0.18
SF3B4-201ENST00000271628 ORC1Q13415 861 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 GLRA4Q5JXX5 417 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 FBXO47Q5MNV8 452 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 GDF6Q6KF10 455 aaPredicted RBP16.17■□□□□ 0.18
SF3B4-201ENST00000271628 SERINC5Q86VE9 423 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 C10orf67Q8IYJ2 551 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 EXD1Q8NHP7 514 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 FNIP1Q8TF40 1166 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 C18orf25Q96B23 403 aaPredicted RBP16.17■□□□□ 0.18
SF3B4-201ENST00000271628 ERP44Q9BS26 406 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 CXCL16Q9H2A7 254 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 LRRC19Q9H756 370 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 HOMER3Q9NSC5 361 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 USTQ9Y2C2 406 aa16.17■□□□□ 0.18
SF3B4-201ENST00000271628 PDCD11Q14690 1871 aaKnown RBP16.17■□□□□ 0.18
SF3B4-201ENST00000271628 TOMM70O94826 608 aa16.16■□□□□ 0.18
SF3B4-201ENST00000271628 ASGR1P07306 291 aa16.16■□□□□ 0.18
SF3B4-201ENST00000271628 RARAP10276 462 aa16.16■□□□□ 0.18
SF3B4-201ENST00000271628 HOXD10P28358 340 aa16.16■□□□□ 0.18
SF3B4-201ENST00000271628 GBP1P32455 592 aa16.16■□□□□ 0.18
SF3B4-201ENST00000271628 PSMC1P62191 440 aaKnown RBP16.16■□□□□ 0.18
SF3B4-201ENST00000271628 DEFB115Q30KQ5 88 aa16.16■□□□□ 0.18
SF3B4-201ENST00000271628 FAM47CQ5HY64 1035 aa16.16■□□□□ 0.18
SF3B4-201ENST00000271628 CYP4A22Q5TCH4 519 aa16.16■□□□□ 0.18
SF3B4-201ENST00000271628 HACE1Q8IYU2 909 aa16.16■□□□□ 0.18
SF3B4-201ENST00000271628 CPXM1Q96SM3 734 aa16.16■□□□□ 0.18
SF3B4-201ENST00000271628 CYTH4Q9UIA0 394 aa16.16■□□□□ 0.18
SF3B4-201ENST00000271628 CENPFP49454 3210 aa16.16■□□□□ 0.18
SF3B4-201ENST00000271628 EIF3HO15372 352 aaKnown RBP eCLIP16.15■□□□□ 0.18
SF3B4-201ENST00000271628 CST5P28325 142 aaPredicted RBP16.15■□□□□ 0.18
SF3B4-201ENST00000271628 COILP38432 576 aaPredicted RBP16.15■□□□□ 0.18
SF3B4-201ENST00000271628 PDCLQ13371 301 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 TTMPQ5BVD1 217 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 EMC10Q5UCC4 262 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 JAMLQ86YT9 394 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 CCDC105Q8IYK2 499 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 ZDHHC14Q8IZN3 488 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 PCSK9Q8NBP7 692 aaKnown RBP16.15■□□□□ 0.18
SF3B4-201ENST00000271628 SMG8Q8ND04 991 aaKnown RBP16.15■□□□□ 0.18
SF3B4-201ENST00000271628 KLHDC9Q8NEP7 349 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 IPO4Q8TEX9 1081 aaKnown RBP16.15■□□□□ 0.18
SF3B4-201ENST00000271628 RBM41Q96IZ5 413 aaKnown RBP16.15■□□□□ 0.18
SF3B4-201ENST00000271628 GDAP2Q9NXN4 497 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 SCN1AP35498 2009 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 KPNA7A9QM74 516 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 DAPK3O43293 454 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 GJB6O95452 261 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 MAGEA9P43362 315 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 CORO7P57737 925 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 TAS2R40P59535 323 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 TRIM32Q13049 653 aa16.15■□□□□ 0.18
SF3B4-201ENST00000271628 SIX1Q15475 284 aaPredicted RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms