RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 BST2Q10589 180 aaKnown RBP12.2□□□□□ -0.46
VPS4A-201ENST00000254950 OVOS1Q6IE37 1185 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 SLC39A4Q6P5W5 647 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 ZNF662Q6ZS27 426 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 PALM2Q8IXS6 379 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 HHIPL1Q96JK4 782 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 BTBD6Q96KE9 485 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 GCNAQ96QF7 691 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 FIZ1Q96SL8 496 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 OSBPL8Q9BZF1 889 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 ARHGAP39Q9C0H5 1083 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 MINDY3Q9H8M7 445 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 RNF186Q9NXI6 227 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 FAN1Q9Y2M0 1017 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 TIMM13Q9Y5L4 95 aaPredicted RBP12.2□□□□□ -0.46
VPS4A-201ENST00000254950 PROSCO94903 275 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 SULT1E1P49888 294 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 DHX34Q14147 1143 aaKnown RBP12.2□□□□□ -0.46
VPS4A-201ENST00000254950 HGSNATQ68CP4 663 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 C11orf63Q6NUN7 778 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 ELMSAN1Q6PJG2 1045 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 CCDC137Q6PK04 289 aaKnown RBP12.2□□□□□ -0.46
VPS4A-201ENST00000254950 ABCB6Q9NP58 842 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 KLHL11Q9NVR0 708 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 NFU1Q9UMS0 254 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 H3BRJ5 948 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 BASP1P80723 227 aaKnown RBP12.2□□□□□ -0.46
VPS4A-201ENST00000254950 NFE2Q16621 373 aaPredicted RBP12.2□□□□□ -0.46
VPS4A-201ENST00000254950 CEP85LQ5SZL2 805 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 CCDC91Q7Z6B0 441 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 TMEM86AQ8N2M4 240 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 C1orf54Q8WWF1 131 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 MRPL9Q9BYD2 267 aaKnown RBP12.2□□□□□ -0.46
VPS4A-201ENST00000254950 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.2□□□□□ -0.46
VPS4A-201ENST00000254950 ABI2Q9NYB9 513 aaPredicted RBP12.2□□□□□ -0.46
VPS4A-201ENST00000254950 KIAA0754O94854 1291 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 CST3P01034 146 aaPredicted RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 RALAP11233 206 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 ACO1P21399 889 aaKnown RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 FMO1Q01740 532 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 DHX9Q08211 1270 aaKnown RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 MEI1Q5TIA1 1274 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 RWDD4Q6NW29 188 aaKnown RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 ARHGEF18Q6ZSZ5 1173 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 LPPQ93052 612 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 MRRFQ96E11 262 aaKnown RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 EIF2AQ9BY44 585 aaKnown RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 SMARCAL1Q9NZC9 954 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 AMACRQ9UHK6 382 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 SSC5DA1L4H1 1573 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 SMIM28A0A1B0GU29 152 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 CREB3O43889 395 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 MICAL2O94851 1124 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 ZFXP17010 805 aaPredicted RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 PHBP35232 272 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 PTK7Q13308 1070 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 CNGA2Q16280 664 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 SLC10A6Q3KNW5 377 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 DCAF6Q58WW2 860 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 MDH1BQ5I0G3 518 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 TMEM63BQ5T3F8 832 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 C1orf127Q8N9H9 656 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 EPC1Q9H2F5 836 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 R3HDMLQ9H3Y0 253 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 KCNK9Q9NPC2 374 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 ATP8A1Q9Y2Q0 1164 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 TARSL2A2RTX5 802 aaKnown RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 ACAT1P24752 427 aaKnown RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 CCND3P30281 292 aaPredicted RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 YWHAHQ04917 246 aaPredicted RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 ZNF268Q14587 947 aaPredicted RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 MGAT5BQ3V5L5 792 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 BOLA3Q53S33 107 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 LRRC31Q6UY01 552 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 GABPB2Q8TAK5 448 aaPredicted RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 ARHGEF26Q96DR7 871 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 RBM12Q9NTZ6 932 aaKnown RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 TAS2R14Q9NYV8 317 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 REXO2Q9Y3B8 237 aaKnown RBP12.19□□□□□ -0.46
VPS4A-201ENST00000254950 MYH7BA7E2Y1 1941 aa12.19□□□□□ -0.46
VPS4A-201ENST00000254950 IGKV6-21A0A0C4DH24 114 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 TBKBP1A7MCY6 615 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 H7C4K7 107 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 PSTPIP1O43586 416 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 APOEP02649 317 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 HPDP32754 393 aaPredicted RBP12.18□□□□□ -0.46
VPS4A-201ENST00000254950 RPL9P32969 192 aaKnown RBP12.18□□□□□ -0.46
VPS4A-201ENST00000254950 DEUP1Q05D60 604 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 SLMAPQ14BN4 828 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 ZNF280DQ6N043 979 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 BBS5Q8N3I7 341 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 LRRC1Q9BTT6 524 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 SEZ6LQ9BYH1 1024 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 SIX2Q9NPC8 291 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 PDLIM7Q9NR12 457 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 AAASQ9NRG9 546 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.18□□□□□ -0.46
VPS4A-201ENST00000254950 PCDHGC5Q9Y5F6 944 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 STYXL1Q9Y6J8 313 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms