RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 SLCO2A1Q92959 643 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 SMC6Q96SB8 1091 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 DHX33Q9H6R0 707 aaKnown RBP22.44■■□□□ 1.18
TRIM28-201ENST00000253024 GPATCH2LQ9NWQ4 482 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 GGA3Q9NZ52 723 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 DIAPH2O60879 1101 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 IL9RQ01113 521 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 MAP3K10Q02779 954 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 HHATQ5VTY9 493 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 LVRNQ6Q4G3 990 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 RFX6Q8HWS3 928 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 UNC45BQ8IWX7 931 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 ZCCHC9Q8N567 271 aaKnown RBP22.44■■□□□ 1.18
TRIM28-201ENST00000253024 CXorf56Q9H5V9 222 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 ZC3H11AO75152 810 aaKnown RBP eCLIP22.43■■□□□ 1.182e-13■■■□□ 16.2
TRIM28-201ENST00000253024 STAM2O75886 525 aa22.43■■□□□ 1.18
TRIM28-201ENST00000253024 MAN1A1P33908 653 aa22.43■■□□□ 1.18
TRIM28-201ENST00000253024 NAMPTP43490 491 aa22.43■■□□□ 1.18
TRIM28-201ENST00000253024 NAA25Q14CX7 972 aa22.43■■□□□ 1.18
TRIM28-201ENST00000253024 C3orf62Q6ZUJ4 267 aa22.43■■□□□ 1.18
TRIM28-201ENST00000253024 CROCCP2Q86T23 111 aa22.43■■□□□ 1.18
TRIM28-201ENST00000253024 ZNF677Q86XU0 584 aa22.43■■□□□ 1.18
TRIM28-201ENST00000253024 NSMCE1Q8WV22 266 aa22.43■■□□□ 1.18
TRIM28-201ENST00000253024 MAML1Q92585 1016 aa22.43■■□□□ 1.18
TRIM28-201ENST00000253024 TWNKQ96RR1 684 aa22.43■■□□□ 1.18
TRIM28-201ENST00000253024 NR2E3Q9Y5X4 410 aa22.43■■□□□ 1.18
TRIM28-201ENST00000253024 SEPT7Q16181 437 aaKnown RBP22.43■■□□□ 1.18
TRIM28-201ENST00000253024 TRABD2AQ86V40 505 aa22.43■■□□□ 1.18
TRIM28-201ENST00000253024 PHF13Q86YI8 300 aaPredicted RBP22.43■■□□□ 1.18
TRIM28-201ENST00000253024 ARFGAP1Q8N6T3 406 aa22.43■■□□□ 1.18
TRIM28-201ENST00000253024 CFAP57Q96MR6 1250 aa22.43■■□□□ 1.18
TRIM28-201ENST00000253024 hCG_1818297A0A087WSY0 165 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 ARIH2O95376 493 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 ANP32DO95626 131 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 KRT3P12035 628 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 ATP11AP98196 1134 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 SCYL2Q6P3W7 929 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 C1orf228Q6PIY5 440 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 ALLCQ8N6M5 410 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 MTMR14Q8NCE2 650 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 TMEM35BQ8NCS4 154 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 PYROXD1Q8WU10 500 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 RSAD2Q8WXG1 361 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 CPXM1Q96SM3 734 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 OAS1P00973 400 aaKnown RBP22.42■■□□□ 1.18
TRIM28-201ENST00000253024 RGS7P49802 495 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 STAT4Q14765 748 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 PREPLQ4J6C6 727 aaPredicted RBP22.42■■□□□ 1.18
TRIM28-201ENST00000253024 TFDP3Q5H9I0 405 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 GADL1Q6ZQY3 521 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 RCOR2Q8IZ40 523 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 PIWIL1Q96J94 861 aaKnown RBP22.42■■□□□ 1.18
TRIM28-201ENST00000253024 MYCBPQ99417 103 aaPredicted RBP22.42■■□□□ 1.18
TRIM28-201ENST00000253024 SMYD3Q9H7B4 428 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 BTBD7Q9P203 1132 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 SLC17A7Q9P2U7 560 aa22.42■■□□□ 1.18
TRIM28-201ENST00000253024 DKC1O60832 514 aaKnown RBP eCLIP22.41■■□□□ 1.18
TRIM28-201ENST00000253024 FAM155BO75949 473 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 ASS1P00966 412 aaKnown RBP22.41■■□□□ 1.18
TRIM28-201ENST00000253024 PRKCBP05771 671 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 ARL2P36404 184 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 GPX6P59796 221 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 HIF1AQ16665 826 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 RFX8Q6ZV50 586 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 FBF1Q8TES7 1133 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 MAGEB18Q96M61 343 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 CCDC134Q9H6E4 229 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 CDKN2BP42772 138 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 CLNS1AP54105 237 aaKnown RBP22.41■■□□□ 1.18
TRIM28-201ENST00000253024 C1QBPQ07021 282 aaKnown RBP22.41■■□□□ 1.18
TRIM28-201ENST00000253024 EAPPQ56P03 285 aaPredicted RBP22.41■■□□□ 1.18
TRIM28-201ENST00000253024 DALRD3Q5D0E6 543 aaKnown RBP22.41■■□□□ 1.18
TRIM28-201ENST00000253024 KCTD6Q8NC69 237 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 FBXO36Q8NEA4 188 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 LRRC8CQ8TDW0 803 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 RBM41Q96IZ5 413 aaKnown RBP22.41■■□□□ 1.18
TRIM28-201ENST00000253024 MINDY3Q9H8M7 445 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 UBN1Q9NPG3 1134 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 A0A0G2JND7 137 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 ADCY3O60266 1144 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 LAMTOR4Q0VGL1 99 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 C15orf59Q2T9L4 293 aaPredicted RBP22.41■■□□□ 1.18
TRIM28-201ENST00000253024 SLFN12LQ6IEE8 588 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 MOB2Q70IA6 237 aa22.41■■□□□ 1.18
TRIM28-201ENST00000253024 MAFBQ9Y5Q3 323 aaPredicted RBP22.41■■□□□ 1.18
TRIM28-201ENST00000253024 NOP56O00567 594 aaKnown RBP22.4■■□□□ 1.18
TRIM28-201ENST00000253024 LRCH4O75427 683 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 VCPP55072 806 aaKnown RBP22.4■■□□□ 1.18
TRIM28-201ENST00000253024 NEDD9Q14511 834 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 CAMKK2Q96RR4 588 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 TMEM63AO94886 807 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 TBXAS1P24557 533 aaPredicted RBP22.4■■□□□ 1.18
TRIM28-201ENST00000253024 BNIP1Q12981 228 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 CATSPERGQ6ZRH7 1159 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 IGDCC3Q8IVU1 814 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 PALM2Q8IXS6 379 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 RDM1Q8NG50 284 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 TMEM174Q8WUU8 243 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 CPB2Q96IY4 423 aa22.4■■□□□ 1.18
TRIM28-201ENST00000253024 FAM167BQ9BTA0 163 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms