RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 DARS2Q6PI48 645 aaKnown RBP12.58□□□□□ -0.4
USHBP1-201ENST00000252597 SLC30A9Q6PML9 568 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 ANO5Q75V66 913 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 PDIK1LQ8N165 341 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 FLAD1Q8NFF5 587 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 GRAMD1AQ96CP6 724 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 TMEM120AQ9BXJ8 343 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 NMRK1Q9NWW6 199 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 STOML1Q9UBI4 398 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 hCG_2014768A0A024R1R8 64 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 LOC100653049A0A140TA62 436 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 H0YIN7 160 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 DNALI1O14645 258 aaPredicted RBP12.57□□□□□ -0.4
USHBP1-201ENST00000252597 KRT34O76011 436 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 CD48P09326 243 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 EML3Q32P44 896 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 MSS51Q4VC12 460 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 RNF43Q68DV7 783 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 GPAT2Q6NUI2 795 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 RHBDF2Q6PJF5 856 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 GMCL1P1Q8NEA9 526 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 ZNF516Q92618 1163 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 USP6NLQ92738 828 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 CNKSR1Q969H4 720 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 SENP7Q9BQF6 1050 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 TMEM109Q9BVC6 243 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 TRIM4Q9C037 500 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 CCDC134Q9H6E4 229 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 SLC9A2Q9UBY0 812 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 FBXO40Q9UH90 709 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 SCOCQ9UIL1 159 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 ADGRA3Q8IWK6 1321 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 ETS2P15036 469 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 GLRA2P23416 452 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 RAP1GAPP47736 663 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 TRAF1Q13077 416 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 PTK7Q13308 1070 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 FNBP1LQ5T0N5 605 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 WDR78Q5VTH9 848 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 TDRD10Q5VZ19 366 aaKnown RBP12.57□□□□□ -0.4
USHBP1-201ENST00000252597 NPNTQ6UXI9 565 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 LARGE2Q8N3Y3 721 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 POU5F2Q8N7G0 328 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 ATXN7L3BQ96GX2 97 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 RIT2Q99578 217 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 VCXQ9H320 206 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 AGO4Q9HCK5 861 aaKnown RBP12.57□□□□□ -0.4
USHBP1-201ENST00000252597 OAS1P00973 400 aaKnown RBP12.57□□□□□ -0.4
USHBP1-201ENST00000252597 LINGO3P0C6S8 592 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 PHBP35232 272 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 ARL4CP56559 192 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 TAF5Q15542 800 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 DACT2Q5SW24 774 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 C1orf146Q5VVC0 180 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 CLNKQ7Z7G1 428 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 CCNJLQ8IV13 435 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 SLC9A9Q8IVB4 645 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 ZCCHC9Q8N567 271 aaKnown RBP12.57□□□□□ -0.4
USHBP1-201ENST00000252597 ZNF483Q8TF39 744 aaPredicted RBP12.57□□□□□ -0.4
USHBP1-201ENST00000252597 WDR60Q8WVS4 1066 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 DDX1Q92499 740 aaKnown RBP12.57□□□□□ -0.4
USHBP1-201ENST00000252597 PAPOLBQ9NRJ5 636 aaKnown RBP12.57□□□□□ -0.4
USHBP1-201ENST00000252597 NUB1Q9Y5A7 615 aa12.57□□□□□ -0.4
USHBP1-201ENST00000252597 I3L4J1 428 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 CYB561D2O14569 222 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 LIASO43766 372 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 STK10O94804 968 aaKnown RBP12.56□□□□□ -0.4
USHBP1-201ENST00000252597 GEMIN4P57678 1058 aaKnown RBP12.56□□□□□ -0.4
USHBP1-201ENST00000252597 FAAP100Q0VG06 881 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 NCOA4Q13772 614 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 R3HDM1Q15032 1099 aaKnown RBP12.56□□□□□ -0.4
USHBP1-201ENST00000252597 ZRSR2Q15696 482 aaKnown RBP12.56□□□□□ -0.4
USHBP1-201ENST00000252597 PPP6R3Q5H9R7 873 aaPredicted RBP12.56□□□□□ -0.4
USHBP1-201ENST00000252597 TATDN1Q6P1N9 297 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 SPOCD1Q6ZMY3 1216 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 ZNF606Q8WXB4 792 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 PARVAQ9NVD7 372 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 GINS2Q9Y248 185 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 C2CD2Q9Y426 696 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 PTPRJQ12913 1337 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 TOP3BO95985 862 aaKnown RBP12.56□□□□□ -0.4
USHBP1-201ENST00000252597 T-ENOLP0DO92 83 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 SKIP12755 728 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 SLC1A1P43005 524 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 CDH8P55286 799 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 GTF2BQ00403 316 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 CUL2Q13617 745 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 BLMHQ13867 455 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 PDK4Q16654 411 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 MROH9Q5TGP6 573 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 SLC39A4Q6P5W5 647 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 ASRGL1Q7L266 308 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 SLC7A6OSQ96CW6 309 aaPredicted RBP12.56□□□□□ -0.4
USHBP1-201ENST00000252597 CAMKK2Q96RR4 588 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 CADM1Q9BY67 442 aaKnown RBP12.56□□□□□ -0.4
USHBP1-201ENST00000252597 MTMR12Q9C0I1 747 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 APOBEC3GQ9HC16 384 aaKnown RBP12.56□□□□□ -0.4
USHBP1-201ENST00000252597 GPATCH2LQ9NWQ4 482 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 PRKAG3Q9UGI9 489 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 TMX2Q9Y320 296 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms