RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 ZNF507Q8TCN5 953 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 HES2Q9Y543 173 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 SNCAIPQ9Y6H5 919 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 CENPKQ9BS16 269 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 KCNN4O15554 427 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 ZNF500O60304 480 aaPredicted RBP14.4□□□□□ -0.1
SIX4-201ENST00000216513 PLCL1Q15111 1095 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 RHOT1Q8IXI2 618 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 PPHLN1Q8NEY8 458 aaKnown RBP14.4□□□□□ -0.1
SIX4-201ENST00000216513 SENP1Q9P0U3 644 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 SF3B1O75533 1304 aaKnown RBP eCLIP14.4□□□□□ -0.11e-7■■■■■ 172.3
SIX4-201ENST00000216513 NFASCO94856 1347 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 RPTORQ8N122 1335 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 C3orf70A6NLC5 250 aaPredicted RBP14.4□□□□□ -0.1
SIX4-201ENST00000216513 SLC26A4O43511 780 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 CREMQ03060 361 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 LCA5Q86VQ0 697 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 DNAAF5Q86Y56 855 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 ZNF296Q8WUU4 475 aaPredicted RBP14.4□□□□□ -0.1
SIX4-201ENST00000216513 PBKQ96KB5 322 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 BFARQ9NZS9 450 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 WDR35Q9P2L0 1181 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 PTCH2Q9Y6C5 1203 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 GOLGA8KD6RF30 607 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 FAM86B1E9PN63 330 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 FZD9O00144 591 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 RECQL4O94761 1208 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 ALDH1A2O94788 518 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 FAM86B2P0C5J1 330 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 VEGFBP49765 207 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 DR1Q01658 176 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 MFN1Q8IWA4 741 aa14.4□□□□□ -0.1
SIX4-201ENST00000216513 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.4□□□□□ -0.1
SIX4-201ENST00000216513 MCF2P10911 925 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 OXCT1P55809 520 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 CCL14Q16627 93 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 USP49Q70CQ1 688 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 DAGLBQ8NCG7 672 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 PDZD8Q8NEN9 1154 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 C1orf54Q8WWF1 131 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 GOLPH3Q9H4A6 298 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 BRD9Q9H8M2 597 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 SPAG7O75391 227 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 GLUD1P00367 558 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 RTP1P59025 263 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 USP41Q3LFD5 358 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 ZRANB3Q5FWF4 1079 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 BRI3BPQ8WY22 251 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 ATMINO43313 823 aaPredicted RBP14.39□□□□□ -0.11
SIX4-201ENST00000216513 PNMA6AP0CW24 399 aaPredicted RBP14.39□□□□□ -0.11
SIX4-201ENST00000216513 GPD1P21695 349 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 YWHAQP27348 245 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 VCPP55072 806 aaKnown RBP14.39□□□□□ -0.11
SIX4-201ENST00000216513 PRKCQQ04759 706 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 STK4Q13043 487 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 TCEA2Q15560 299 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 RBBP7Q16576 425 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 EDEM1Q92611 657 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 TTC17Q96AE7 1141 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 LATS2Q9NRM7 1088 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 AGPAT3Q9NRZ7 376 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 CARNS1A5YM72 827 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 CAND2O75155 1236 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 GRIN1Q05586 938 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 TMEM259Q4ZIN3 620 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 SCLYQ96I15 445 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 SAYSD1Q9NPB0 183 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 POLR1AO95602 1720 aaPredicted RBP14.39□□□□□ -0.11
SIX4-201ENST00000216513 MFAP3LO75121 409 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.39□□□□□ -0.11
SIX4-201ENST00000216513 IPMKQ8NFU5 416 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 KIF13AQ9H1H9 1805 aa14.39□□□□□ -0.11
SIX4-201ENST00000216513 TMEM247A6NEH6 219 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 EIF3EP60228 445 aaKnown RBP14.38□□□□□ -0.11
SIX4-201ENST00000216513 SMTNL2Q2TAL5 461 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 ATAT1Q5SQI0 421 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 FLCNQ8NFG4 579 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 CBWD1Q9BRT8 395 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 VPS11Q9H270 941 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.38□□□□□ -0.11
SIX4-201ENST00000216513 TMCC1O94876 653 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 HIST1H2AGP0C0S8 130 aaPredicted RBP14.38□□□□□ -0.11
SIX4-201ENST00000216513 HIST1H2ADP20671 130 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 MAP2K2P36507 400 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 PHACTR4Q8IZ21 702 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 HIST1H2AHQ96KK5 128 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 HIST1H2AJQ99878 128 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 H2AFJQ9BTM1 129 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 SRRDQ9UH36 339 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 PKP3Q9Y446 797 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 CFAP99D6REC4 459 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 ZNF197O14709 1029 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 MMP3P08254 477 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 TKTL1P51854 596 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 SESN2P58004 480 aaPredicted RBP14.38□□□□□ -0.11
SIX4-201ENST00000216513 CUL2Q13617 745 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 C16orf59Q7L2K0 433 aa14.38□□□□□ -0.11
SIX4-201ENST00000216513 CCDC60Q8IWA6 550 aaPredicted RBP14.38□□□□□ -0.11
SIX4-201ENST00000216513 C1orf131Q8NDD1 294 aaKnown RBP14.38□□□□□ -0.11
SIX4-201ENST00000216513 ALDH8A1Q9H2A2 487 aaPredicted RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms