RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ANKRD27Q96NW4 1050 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 RMDN3Q96TC7 470 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TBCDQ9BTW9 1192 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 WWP1Q9H0M0 922 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SRP68Q9UHB9 627 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 DNPEPQ9ULA0 475 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 KIAA1257Q9ULG3 409 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PTPN22Q9Y2R2 807 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 AP4S1Q9Y587 144 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CHP2O43745 196 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 HTR1BP28222 390 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 HADHAP40939 763 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PMS2P54278 862 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 MRPS25P82663 173 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 ACTN3Q08043 901 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TWF1Q12792 350 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 LONRF2Q1L5Z9 754 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SYTL3Q4VX76 610 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 ARHGAP17Q68EM7 881 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SMYD5Q6GMV2 418 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 FAM178BQ8IXR5 827 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CDK20Q8IZL9 346 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PPHLN1Q8NEY8 458 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TDRD7Q8NHU6 1098 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 THOC1Q96FV9 657 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TNIP3Q96KP6 325 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 B3GALT6Q96L58 329 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 MRPL9Q9BYD2 267 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 LSG1Q9H089 658 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CHRAC1Q9NRG0 131 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 KRT84Q9NSB2 600 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 HACD3Q9P035 362 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 RBMX2Q9Y388 322 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 HBS1LQ9Y450 684 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PCDHA1Q9Y5I3 950 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 RIMS2Q9UQ26 1411 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 MROH5Q6ZUA9 1318 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 POTEMA6NI47 508 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 USP27XA6NNY8 438 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PDZK1P1A8MUH7 402 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 GPR182O15218 404 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 POP4O95707 220 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SLC25A27O95847 323 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 S100A6P06703 90 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TECP42680 631 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 AKR1D1P51857 326 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CSE1LP55060 971 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 INHBCP55103 352 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 MTTPP55157 894 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TRAP1Q12931 704 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 DMC1Q14565 340 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TMEM154Q6P9G4 183 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 POTEGQ6S5H5 508 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 NANOGNBQ7Z5D8 188 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TAF8Q7Z7C8 310 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TRIM69Q86WT6 500 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 C2CD5Q86YS7 1000 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 METTL21AQ8WXB1 218 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 RUBCNQ92622 972 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 ZPBPQ9BS86 351 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 EPS8L2Q9H6S3 715 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TRPV4Q9HBA0 871 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 POLMQ9NP87 494 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 STARD7Q9NQZ5 370 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CAMSAP3Q9P1Y5 1249 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 RPS6KB2Q9UBS0 482 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 AMFRQ9UKV5 643 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 BLOC1S6Q9UL45 172 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PCDHGA3Q9Y5H0 932 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SYNDIG1LA6NDD5 238 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 FAM25AB3EWG3 89 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 FAM25CB3EWG5 89 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 FAM25GB3EWG6 89 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 GYG2O15488 501 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SASH3O75995 380 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CD19P15391 556 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PTGS2P35354 604 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 RGS8P57771 180 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PFKPQ01813 784 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 ATP13A5Q4VNC0 1218 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 DCAF6Q58WW2 860 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CARD16Q5EG05 197 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CACHD1Q5VU97 1274 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SPATA31E1Q6ZUB1 1445 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 FAM160B2Q86V87 743 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 BEND7Q8N7W2 519 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SNX21Q969T3 373 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 RMND5BQ96G75 393 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 FAR2Q96K12 515 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TSPAN18Q96SJ8 248 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF717Q9BY31 904 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 ZCCHC2Q9C0B9 1178 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 COPS7BQ9H9Q2 264 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 ZSWIM5Q9P217 1185 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 BAHCC1Q9P281 2608 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 ADAMTS8Q9UP79 889 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 KIF14Q15058 1648 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 C9orf84Q5VXU9 1444 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 AFDNP55196 1824 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PHF2O75151 1096 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms