RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 ZDHHC7Q9NXF8 308 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 GDAP2Q9NXN4 497 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 PRKAG3Q9UGI9 489 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 L1RE1Q9UN81 338 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 TSC2P49815 1807 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 PMM2O15305 246 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 CCL16O15467 120 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 SEC24AO95486 1093 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 VNN1O95497 513 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 HNRNPA1P09651 372 aaKnown RBP eCLIP10.57□□□□□ -0.72
CLN3-261ENST00000637686 TRIM49P0CI25 452 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 TRIM49CP0CI26 452 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 SP100P23497 879 aaPredicted RBP10.57□□□□□ -0.72
CLN3-261ENST00000637686 SSTR3P32745 418 aaPredicted RBP10.57□□□□□ -0.72
CLN3-261ENST00000637686 CDR1P51861 262 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 ZP2Q05996 745 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 MAN2A1Q16706 1144 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 SOWAHAQ2M3V2 549 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 ZACNQ401N2 412 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 C15orf39Q6ZRI6 1047 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 CCDC149Q6ZUS6 474 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 SV2AQ7L0J3 742 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 OSTM1Q86WC4 334 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 TRIM59Q8IWR1 403 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 TOP6BLQ8N6T0 577 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 ELMO3Q96BJ8 720 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 RPGRIP1Q96KN7 1286 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 MMS19Q96T76 1030 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 PRKD2Q9BZL6 878 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 ZCWPW1Q9H0M4 648 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 MMRN2Q9H8L6 949 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 PIDD1Q9HB75 910 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 CYP4F11Q9HBI6 524 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 CD320Q9NPF0 282 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 DDX43Q9NXZ2 648 aaKnown RBP10.57□□□□□ -0.72
CLN3-261ENST00000637686 ARMCX3Q9UH62 379 aaPredicted RBP10.57□□□□□ -0.72
CLN3-261ENST00000637686 AFF4Q9UHB7 1163 aaKnown RBP10.57□□□□□ -0.72
CLN3-261ENST00000637686 POLIQ9UNA4 740 aa10.57□□□□□ -0.72
CLN3-261ENST00000637686 C19orf67A6NJJ6 358 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 PRRG1O14668 218 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 PAPLNO95428 1278 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 VNN2O95498 520 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 SERPINC1P01008 464 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 ATP1A3P13637 1013 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 HOXA9P31269 272 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 ATICP31939 592 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 GCLMP48507 274 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 LHX1P48742 406 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 COPB1P53618 953 aaKnown RBP10.56□□□□□ -0.72
CLN3-261ENST00000637686 PPP3CAQ08209 521 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 DUSP4Q13115 394 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 GPR17Q13304 367 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 NCOA4Q13772 614 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 KRT31Q15323 416 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 WDR72Q3MJ13 1102 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 SLC39A12Q504Y0 691 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 SMYD5Q6GMV2 418 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 CYP26C1Q6V0L0 522 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 RTL10Q7L3V2 364 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 DPH6Q7L8W6 267 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 LRRTM3Q86VH5 581 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 ADGRF2Q8IZF7 708 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 GJD3Q8N144 294 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 TMEM86AQ8N2M4 240 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 ATAD1Q8NBU5 361 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 IQCDQ96DY2 449 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 PDLIM2Q96JY6 352 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 TUBGCP2Q9BSJ2 902 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 RHOBTB2Q9BYZ6 727 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 TRIM5Q9C035 493 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 XYLT2Q9H1B5 865 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 CRISPLD1Q9H336 500 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 RTN4Q9NQC3 1192 aaKnown RBP10.56□□□□□ -0.72
CLN3-261ENST00000637686 NXF1Q9UBU9 619 aaKnown RBP10.56□□□□□ -0.72
CLN3-261ENST00000637686 MAFFQ9ULX9 164 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 C2orf16Q68DN1 1984 aa10.56□□□□□ -0.72
CLN3-261ENST00000637686 A0A1W2PQC6 194 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 GTPBP10A4D1E9 387 aaKnown RBP10.55□□□□□ -0.72
CLN3-261ENST00000637686 MTMR11A4FU01 709 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 LGALS16A8MUM7 142 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 LOC730098B7Z3J9 87 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 GABRDO14764 452 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 P4HA2O15460 535 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 HCRTO43612 131 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 XYLBO75191 536 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 CLSTN1O94985 981 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 STAU1O95793 577 aaKnown RBP10.55□□□□□ -0.72
CLN3-261ENST00000637686 HLA-DRAP01903 254 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 LRG1P02750 347 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 ACAT1P24752 427 aaKnown RBP10.55□□□□□ -0.72
CLN3-261ENST00000637686 GTF2H1P32780 548 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 PIK3CAP42336 1068 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 ZNF75DP51815 510 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 UBASH3AP57075 661 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 TNNC1P63316 161 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 MYL7Q01449 175 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 TWF1Q12792 350 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 NR1I3Q14994 352 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 ZNF699Q32M78 642 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 CCDC40Q4G0X9 1142 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms