RNA–Protein interactions for RNA: ENST00000636058.1

CACNA1A-223, Transcript of calcium voltage-gated channel subunit alpha1 A, human

TSL 5

Gene CACNA1A, Length 656 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA1A-223	ENST00000636058	EFEMP2	O95967	443 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	CYP1A1	P04798	512 aa	Predicted RBP	10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	CFH	P08603	1231 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	VDR	P11473	427 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	BRD2	P25440	801 aa	Known RBP	10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	PBX3	P40426	434 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	LHX1	P48742	406 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	ALDH7A1	P49419	539 aa	Known RBP	10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	BTG3	Q14201	252 aa	Predicted RBP	10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	SPA17	Q15506	151 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	C10orf76	Q5T2E6	689 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	ALKBH5	Q6P6C2	394 aa	Known RBP	10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	ACOT1	Q86TX2	421 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	TMEM173	Q86WV6	379 aa	Predicted RBP	10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	HERC6	Q8IVU3	1022 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	CCAR2	Q8N163	923 aa	Known RBP	10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	BCL7C	Q8WUZ0	217 aa	Predicted RBP	10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	HEXIM2	Q96MH2	286 aa	Known RBP	10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	RTP3	Q9BQQ7	232 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	KIAA1671	Q9BY89	1806 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	DNAI2	Q9GZS0	605 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	MTIF3	Q9H2K0	278 aa	Known RBP	10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	DPEP3	Q9H4B8	488 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	DDX43	Q9NXZ2	648 aa	Known RBP	10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	PUF60	Q9UHX1	559 aa	Known RBP	10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	PCDHGC3	Q9UN70	934 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	INSL6	Q9Y581	213 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	PCDHA13	Q9Y5I0	950 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	TIMM13	Q9Y5L4	95 aa	Predicted RBP	10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	MRPL42	Q9Y6G3	142 aa	Known RBP	10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	SLC4A7	Q9Y6M7	1214 aa		10.2	□□□□□ -0.78
CACNA1A-223	ENST00000636058	VWA8	A3KMH1	1905 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	SF3B1	O75533	1304 aa	Known RBP eCLIP	10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	CARNS1	A5YM72	827 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	USP27X	A6NNY8	438 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	NT5C1B-RDH14	C9J2C7	533 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058		O00370	1275 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	SYN3	O14994	580 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	ZSCAN12	O43309	604 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	MED7	O43513	233 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	LSM8	O95777	96 aa	Known RBP	10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	PDGFRB	P09619	1106 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	LINC00271	P0C7V0	271 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	GZMA	P12544	262 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	UNG	P13051	313 aa	Predicted RBP	10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	CD19	P15391	556 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	ATP2A2	P16615	1042 aa	Known RBP	10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	LAG3	P18627	525 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	FGFR3	P22607	806 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	CDH5	P33151	784 aa	Predicted RBP	10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	MAGEA1	P43355	309 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	MAGEA10	P43363	369 aa	Predicted RBP	10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	VAV2	P52735	878 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	ELAVL2	Q12926	359 aa	Known RBP	10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	STIL	Q15468	1287 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	CNGA2	Q16280	664 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	CLEC16A	Q2KHT3	1053 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	SGO2	Q562F6	1265 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	CCDC122	Q5T0U0	273 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	ARHGAP17	Q68EM7	881 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	OVOS1	Q6IE37	1185 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	FUT10	Q6P4F1	479 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	KCNT2	Q6UVM3	1135 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	TRIM72	Q6ZMU5	477 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	ZNF662	Q6ZS27	426 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	METTL23	Q86XA0	190 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	RNF168	Q8IYW5	571 aa	Predicted RBP	10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	SLC39A11	Q8N1S5	342 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	C17orf53	Q8N3J3	647 aa	Predicted RBP	10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	C12orf29	Q8N999	325 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	B3GALNT2	Q8NCR0	500 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	SP7	Q8TDD2	431 aa	Predicted RBP	10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	IGSF21	Q96ID5	467 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	TNIP3	Q96KP6	325 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	ACBD6	Q9BR61	282 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	GPR62	Q9BZJ7	368 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	ISCU	Q9H1K1	167 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	SEPT11	Q9NVA2	429 aa	Known RBP	10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	TAS2R14	Q9NYV8	317 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	CDH9	Q9ULB4	789 aa		10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	10.19	□□□□□ -0.78
CACNA1A-223	ENST00000636058		A0A0U1RQJ8	604 aa		10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	ESPN	B1AK53	854 aa		10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	CCP110	O43303	1012 aa		10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	OAZ2	O95190	189 aa		10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	PTPN1	P18031	435 aa	Known RBP	10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	ACAT1	P24752	427 aa	Known RBP	10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	MSN	P26038	577 aa	Known RBP	10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	PCSK1	P29120	753 aa		10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	TKT	P29401	623 aa	Known RBP	10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	NOMO3	P69849	1222 aa		10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	CENPC	Q03188	943 aa		10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	YWHAH	Q04917	246 aa	Predicted RBP	10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	MRPL58	Q14197	206 aa	Known RBP	10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	C9orf50	Q5SZB4	431 aa		10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	SPOUT1	Q5T280	376 aa	Known RBP	10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	FAM171A1	Q5VUB5	890 aa		10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	KIAA0319	Q5VV43	1072 aa		10.18	□□□□□ -0.78
CACNA1A-223	ENST00000636058	LCLAT1	Q6UWP7	414 aa		10.18	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms