RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 TMEM63CQ9P1W3 806 aa19.47■□□□□ 0.71
CLN3-243ENST00000635973 WNT16Q9UBV4 365 aa19.47■□□□□ 0.71
CLN3-243ENST00000635973 SIX4Q9UIU6 781 aa19.47■□□□□ 0.71
CLN3-243ENST00000635973 H7C4K7 107 aa19.46■□□□□ 0.71
CLN3-243ENST00000635973 SPTLC1O15269 473 aa19.46■□□□□ 0.71
CLN3-243ENST00000635973 SRFP11831 508 aa19.46■□□□□ 0.71
CLN3-243ENST00000635973 AARSP49588 968 aaKnown RBP eCLIP19.46■□□□□ 0.71
CLN3-243ENST00000635973 ARPP19P56211 112 aa19.46■□□□□ 0.71
CLN3-243ENST00000635973 VARS2Q5ST30 1063 aaKnown RBP19.46■□□□□ 0.71
CLN3-243ENST00000635973 TCERG1LQ5VWI1 586 aa19.46■□□□□ 0.71
CLN3-243ENST00000635973 RTL10Q7L3V2 364 aa19.46■□□□□ 0.71
CLN3-243ENST00000635973 RTP3Q9BQQ7 232 aa19.46■□□□□ 0.71
CLN3-243ENST00000635973 GZF1Q9H116 711 aaPredicted RBP19.46■□□□□ 0.71
CLN3-243ENST00000635973 ARMCX3Q9UH62 379 aaPredicted RBP19.46■□□□□ 0.71
CLN3-243ENST00000635973 CDH7Q9ULB5 785 aa19.46■□□□□ 0.71
CLN3-243ENST00000635973 KPNA7A9QM74 516 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 M0QZQ0 153 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 CYB561D2O14569 222 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 PRRG1O14668 218 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 CLDN10P78369 228 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 NTHL1P78549 312 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 YWHAHQ04917 246 aaPredicted RBP19.45■□□□□ 0.7
CLN3-243ENST00000635973 ENPEPQ07075 957 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 STX1AQ16623 288 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 TDRD10Q5VZ19 366 aaKnown RBP19.45■□□□□ 0.7
CLN3-243ENST00000635973 ZNF280DQ6N043 979 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 FILIP1Q7Z7B0 1213 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 METTL23Q86XA0 190 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 ZNF516Q92618 1163 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 HPDLQ96IR7 371 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 METTL14Q9HCE5 456 aaKnown RBP19.45■□□□□ 0.7
CLN3-243ENST00000635973 CA14Q9ULX7 337 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 TIMM13Q9Y5L4 95 aaPredicted RBP19.45■□□□□ 0.7
CLN3-243ENST00000635973 NUMBLQ9Y6R0 609 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 SCN1AP35498 2009 aa19.45■□□□□ 0.7
CLN3-243ENST00000635973 IKBKBO14920 756 aa19.44■□□□□ 0.7
CLN3-243ENST00000635973 STX10O60499 249 aa19.44■□□□□ 0.7
CLN3-243ENST00000635973 GNA14O95837 355 aa19.44■□□□□ 0.7
CLN3-243ENST00000635973 LRG1P02750 347 aa19.44■□□□□ 0.7
CLN3-243ENST00000635973 AOC1P19801 751 aa19.44■□□□□ 0.7
CLN3-243ENST00000635973 PIK3CAP42336 1068 aa19.44■□□□□ 0.7
CLN3-243ENST00000635973 GCLMP48507 274 aa19.44■□□□□ 0.7
CLN3-243ENST00000635973 CTXN3Q4LDR2 81 aa19.44■□□□□ 0.7
CLN3-243ENST00000635973 PABPC1LQ4VXU2 614 aaKnown RBP19.44■□□□□ 0.7
CLN3-243ENST00000635973 MTSS1LQ765P7 747 aa19.44■□□□□ 0.7
CLN3-243ENST00000635973 ZNF461Q8TAF7 563 aa19.44■□□□□ 0.7
CLN3-243ENST00000635973 SRRTQ9BXP5 876 aaKnown RBP19.44■□□□□ 0.7
CLN3-243ENST00000635973 ANO10Q9NW15 660 aa19.44■□□□□ 0.7
CLN3-243ENST00000635973 DSEQ9UL01 958 aa19.44■□□□□ 0.7
CLN3-243ENST00000635973 SNX9Q9Y5X1 595 aa19.44■□□□□ 0.7
CLN3-243ENST00000635973 ANHXE9PGG2 379 aa19.43■□□□□ 0.7
CLN3-243ENST00000635973 TYMPP19971 482 aa19.43■□□□□ 0.7
CLN3-243ENST00000635973 HTR4Q13639 388 aa19.43■□□□□ 0.7
CLN3-243ENST00000635973 NCOA4Q13772 614 aa19.43■□□□□ 0.7
CLN3-243ENST00000635973 SKOR2Q2VWA4 1001 aaPredicted RBP19.43■□□□□ 0.7
CLN3-243ENST00000635973 CWF19L1Q69YN2 538 aaKnown RBP19.43■□□□□ 0.7
CLN3-243ENST00000635973 OVOS1Q6IE37 1185 aa19.43■□□□□ 0.7
CLN3-243ENST00000635973 RSPO2Q6UXX9 243 aaPredicted RBP19.43■□□□□ 0.7
CLN3-243ENST00000635973 FRMD5Q7Z6J6 570 aa19.43■□□□□ 0.7
CLN3-243ENST00000635973 CREBRFQ8IUR6 639 aa19.43■□□□□ 0.7
CLN3-243ENST00000635973 ST13P5Q8NFI4 369 aaPredicted RBP19.43■□□□□ 0.7
CLN3-243ENST00000635973 CXorf38Q8TB03 319 aa19.43■□□□□ 0.7
CLN3-243ENST00000635973 FGF13Q92913 245 aa19.43■□□□□ 0.7
CLN3-243ENST00000635973 HUS1O60921 280 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 C4BPAP04003 597 aaKnown RBP19.42■□□□□ 0.7
CLN3-243ENST00000635973 POU2F2P09086 479 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 CCDC192P0DO97 292 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 NPR3P17342 541 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 ERCC5P28715 1186 aaPredicted RBP19.42■□□□□ 0.7
CLN3-243ENST00000635973 MXI1P50539 228 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 MYL6P60660 151 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 TNNC1P63316 161 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 ROR1Q01973 937 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 ZNF699Q32M78 642 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 ZACNQ401N2 412 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 C1orf220Q5T0J3 134 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 SCARA3Q6AZY7 606 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 SLC8B1Q6J4K2 584 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 SV2AQ7L0J3 742 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 GPR152Q8TDT2 470 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 BORCS6Q96GS4 357 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 IMPG2Q9BZV3 1241 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 CYP4F11Q9HBI6 524 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 TMEM8AQ9HCN3 771 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 HCFC1R1Q9NWW0 138 aa19.42■□□□□ 0.7
CLN3-243ENST00000635973 MRPS23Q9Y3D9 190 aaKnown RBP19.42■□□□□ 0.7
CLN3-243ENST00000635973 GFRA3O60609 400 aa19.41■□□□□ 0.7
CLN3-243ENST00000635973 LETM1O95202 739 aaPredicted RBP19.41■□□□□ 0.7
CLN3-243ENST00000635973 CST3P01034 146 aaPredicted RBP19.41■□□□□ 0.7
CLN3-243ENST00000635973 PTPN2P17706 415 aa19.41■□□□□ 0.7
CLN3-243ENST00000635973 ATICP31939 592 aa19.41■□□□□ 0.7
CLN3-243ENST00000635973 GTF2H1P32780 548 aa19.41■□□□□ 0.7
CLN3-243ENST00000635973 TYRO3Q06418 890 aa19.41■□□□□ 0.7
CLN3-243ENST00000635973 PPP3CAQ08209 521 aa19.41■□□□□ 0.7
CLN3-243ENST00000635973 CT47A1Q5JQC4 288 aaPredicted RBP19.41■□□□□ 0.7
CLN3-243ENST00000635973 WSCD1Q658N2 575 aa19.41■□□□□ 0.7
CLN3-243ENST00000635973 KRT39Q6A163 491 aa19.41■□□□□ 0.7
CLN3-243ENST00000635973 ELMOD1Q8N336 334 aa19.41■□□□□ 0.7
CLN3-243ENST00000635973 CCDC150Q8NCX0 1101 aa19.41■□□□□ 0.7
CLN3-243ENST00000635973 ITFG1Q8TB96 612 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms