RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 LMAN1LQ9HAT1 526 aa19.87■□□□□ 0.77
CLN3-241ENST00000635861 NCANO14594 1321 aa19.87■□□□□ 0.77
CLN3-241ENST00000635861 GREB1Q4ZG55 1949 aa19.87■□□□□ 0.77
CLN3-241ENST00000635861 ANAPC1Q9H1A4 1944 aa19.86■□□□□ 0.77
CLN3-241ENST00000635861 KIAA0391O15091 583 aaKnown RBP19.86■□□□□ 0.77
CLN3-241ENST00000635861 GCNT3O95395 438 aa19.86■□□□□ 0.77
CLN3-241ENST00000635861 ATF6P18850 670 aa19.86■□□□□ 0.77
CLN3-241ENST00000635861 GPR158Q5T848 1215 aa19.86■□□□□ 0.77
CLN3-241ENST00000635861 RALGPS2Q86X27 583 aaPredicted RBP19.86■□□□□ 0.77
CLN3-241ENST00000635861 TTC9BQ8N6N2 239 aa19.86■□□□□ 0.77
CLN3-241ENST00000635861 FAM200AQ8TCP9 573 aa19.86■□□□□ 0.77
CLN3-241ENST00000635861 TMEM206Q9H813 350 aa19.86■□□□□ 0.77
CLN3-241ENST00000635861 NCDNQ9UBB6 729 aa19.86■□□□□ 0.77
CLN3-241ENST00000635861 HAPLN1P10915 354 aaPredicted RBP19.85■□□□□ 0.77
CLN3-241ENST00000635861 CHRNB1P11230 501 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 TDGF1P13385 188 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 CCNE1P24864 410 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 DDX6P26196 483 aaKnown RBP eCLIP19.85■□□□□ 0.77
CLN3-241ENST00000635861 STAT6P42226 847 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 TSPY1Q01534 308 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 SLC39A14Q15043 492 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 TAF12Q16514 161 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 NFE2Q16621 373 aaPredicted RBP19.85■□□□□ 0.77
CLN3-241ENST00000635861 DGKKQ5KSL6 1271 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 STXBP5Q5T5C0 1151 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 WSCD1Q658N2 575 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 LRRC52Q8N7C0 313 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 LEO1Q8WVC0 666 aaPredicted RBP19.85■□□□□ 0.77
CLN3-241ENST00000635861 RSPRY1Q96DX4 576 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 CLIC6Q96NY7 704 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 FAM213AQ9BRX8 229 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 LRRC27Q9C0I9 530 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 PCDHB5Q9Y5E4 795 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 DNAH14Q0VDD8 3507 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 SPAG17Q6Q759 2223 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 PTPRDP23468 1912 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 MYBPHLA2RUH7 354 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 SOAT2O75908 522 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 PAPSS2O95340 614 aaPredicted RBP19.85■□□□□ 0.77
CLN3-241ENST00000635861 SDHBP21912 280 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 KPNA1P52294 538 aaPredicted RBP19.85■□□□□ 0.77
CLN3-241ENST00000635861 PUM1Q14671 1186 aaKnown RBP eCLIP19.85■□□□□ 0.77
CLN3-241ENST00000635861 STXBP4Q6ZWJ1 553 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 SYCP3Q8IZU3 236 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 TMEM86AQ8N2M4 240 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 SPEM1Q8N4L4 309 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 BPIFB1Q8TDL5 484 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 LPIN3Q9BQK8 851 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 IL21Q9HBE4 155 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 THG1LQ9NWX6 298 aaKnown RBP19.85■□□□□ 0.77
CLN3-241ENST00000635861 RBAKQ9NYW8 714 aaPredicted RBP19.85■□□□□ 0.77
CLN3-241ENST00000635861 ITGA11Q9UKX5 1188 aa19.85■□□□□ 0.77
CLN3-241ENST00000635861 SMG5Q9UPR3 1016 aaKnown RBP19.85■□□□□ 0.77
CLN3-241ENST00000635861 IDEP14735 1019 aa19.84■□□□□ 0.77
CLN3-241ENST00000635861 CXCL12P48061 93 aa19.84■□□□□ 0.77
CLN3-241ENST00000635861 KCNA1Q09470 495 aa19.84■□□□□ 0.77
CLN3-241ENST00000635861 SYNPOQ8N3V7 929 aa19.84■□□□□ 0.77
CLN3-241ENST00000635861 CELF5Q8N6W0 485 aaKnown RBP19.84■□□□□ 0.77
CLN3-241ENST00000635861 RMDN1Q96DB5 314 aa19.84■□□□□ 0.77
CLN3-241ENST00000635861 ACBD6Q9BR61 282 aa19.84■□□□□ 0.77
CLN3-241ENST00000635861 ABCB6Q9NP58 842 aa19.84■□□□□ 0.77
CLN3-241ENST00000635861 PANK4Q9NVE7 773 aa19.84■□□□□ 0.77
CLN3-241ENST00000635861 GDAP2Q9NXN4 497 aa19.84■□□□□ 0.77
CLN3-241ENST00000635861 HELZP42694 1942 aaKnown RBP19.83■□□□□ 0.77
CLN3-241ENST00000635861 SPECC1L-ADORA2AF8WAN1 911 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 EXTL3O43909 919 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 HUS1O60921 280 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 ITGB3P05106 788 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 CSH1P0DML2 217 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 CSH2P0DML3 217 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 CTHP32929 405 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 NASPP49321 788 aaPredicted RBP19.83■□□□□ 0.76
CLN3-241ENST00000635861 TFAMQ00059 246 aaKnown RBP19.83■□□□□ 0.76
CLN3-241ENST00000635861 MYL7Q01449 175 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 TSSK4Q6SA08 328 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 LRRTM3Q86VH5 581 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 CCDC65Q8IXS2 484 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 C1orf127Q8N9H9 656 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 USP28Q96RU2 1077 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 IKZF4Q9H2S9 585 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 CUEDC2Q9H467 287 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 KIF9Q9HAQ2 790 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 ABI2Q9NYB9 513 aaPredicted RBP19.83■□□□□ 0.76
CLN3-241ENST00000635861 DLL3Q9NYJ7 618 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 TBC1D7Q9P0N9 293 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 MTMR6Q9Y217 621 aa19.83■□□□□ 0.76
CLN3-241ENST00000635861 SLC38A8A6NNN8 435 aa19.82■□□□□ 0.76
CLN3-241ENST00000635861 POLR2BP30876 1174 aaKnown RBP19.82■□□□□ 0.76
CLN3-241ENST00000635861 CNR2P34972 360 aa19.82■□□□□ 0.76
CLN3-241ENST00000635861 CEBPZQ03701 1054 aaKnown RBP19.82■□□□□ 0.76
CLN3-241ENST00000635861 SURF1Q15526 300 aa19.82■□□□□ 0.76
CLN3-241ENST00000635861 CMTM8Q8IZV2 173 aa19.82■□□□□ 0.76
CLN3-241ENST00000635861 DCLK2Q8N568 766 aa19.82■□□□□ 0.76
CLN3-241ENST00000635861 SAAL1Q96ER3 474 aa19.82■□□□□ 0.76
CLN3-241ENST00000635861 TNMDQ9H2S6 317 aa19.82■□□□□ 0.76
CLN3-241ENST00000635861 UXTQ9UBK9 157 aaPredicted RBP19.82■□□□□ 0.76
CLN3-241ENST00000635861 RAB23Q9ULC3 237 aa19.82■□□□□ 0.76
CLN3-241ENST00000635861 AGAP1Q9UPQ3 857 aa19.82■□□□□ 0.76
CLN3-241ENST00000635861 STX6O43752 255 aa19.81■□□□□ 0.76
CLN3-241ENST00000635861 PRAMEF12O95522 483 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms