RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ZNF512Q96ME7 567 aaPredicted RBP13.6□□□□□ -0.23
PNKP-217ENST00000625216 NAP1L5Q96NT1 182 aaPredicted RBP13.6□□□□□ -0.23
PNKP-217ENST00000625216 PPP1R9BQ96SB3 815 aa13.6□□□□□ -0.23
PNKP-217ENST00000625216 XPO4Q9C0E2 1151 aaKnown RBP13.6□□□□□ -0.23
PNKP-217ENST00000625216 HCFC1R1Q9NWW0 138 aa13.6□□□□□ -0.23
PNKP-217ENST00000625216 TAB2Q9NYJ8 693 aa13.6□□□□□ -0.23
PNKP-217ENST00000625216 HSFX1Q9UBD0 423 aa13.6□□□□□ -0.23
PNKP-217ENST00000625216 LIMA1Q9UHB6 759 aaKnown RBP13.6□□□□□ -0.23
PNKP-217ENST00000625216 MYO10Q9HD67 2058 aa13.6□□□□□ -0.23
PNKP-217ENST00000625216 TRIP11Q15643 1979 aa13.6□□□□□ -0.23
PNKP-217ENST00000625216 VWA8A3KMH1 1905 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 PPEF2O14830 753 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 CLIC2O15247 247 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 SPTLC1O15269 473 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 CALUO43852 315 aaPredicted RBP13.59□□□□□ -0.23
PNKP-217ENST00000625216 VCPP55072 806 aaKnown RBP13.59□□□□□ -0.23
PNKP-217ENST00000625216 SNRPFP62306 86 aaKnown RBP13.59□□□□□ -0.23
PNKP-217ENST00000625216 FKBP3Q00688 224 aaKnown RBP13.59□□□□□ -0.23
PNKP-217ENST00000625216 CCDC173Q0VFZ6 552 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 SMARCB1Q12824 385 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 PLD1Q13393 1074 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 TCP11X2Q5H9J9 407 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 RNF19BQ6ZMZ0 732 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 METTL23Q86XA0 190 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 NPAS3Q8IXF0 933 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 THEM5Q8N1Q8 247 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 TMEM130Q8N3G9 435 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 MRFAP1L1Q96HT8 127 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 CEP63Q96MT8 703 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 RTP3Q9BQQ7 232 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 KIAA1586Q9HCI6 787 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 SLC2A4RGQ9NR83 387 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 AGPAT3Q9NRZ7 376 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 RBAKQ9NYW8 714 aaPredicted RBP13.59□□□□□ -0.23
PNKP-217ENST00000625216 NUMBLQ9Y6R0 609 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 ZNF318Q5VUA4 2279 aa13.59□□□□□ -0.23
PNKP-217ENST00000625216 A0A1B0GTH6 734 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 ZNF233A6NK53 670 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 KPNA7A9QM74 516 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 CYB561D2O14569 222 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 NARSO43776 548 aaKnown RBP13.58□□□□□ -0.24
PNKP-217ENST00000625216 SERPINC1P01008 464 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 NR3C1P04150 777 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 CDK11BP21127 795 aaKnown RBP13.58□□□□□ -0.24
PNKP-217ENST00000625216 NR2F2P24468 414 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 EEF1GP26641 437 aaKnown RBP13.58□□□□□ -0.24
PNKP-217ENST00000625216 COPB1P53618 953 aaKnown RBP13.58□□□□□ -0.24
PNKP-217ENST00000625216 NHLH1Q02575 133 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 TWF1Q12792 350 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 SURF1Q15526 300 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 NFIL3Q16649 462 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 SV2CQ496J9 727 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 PARM1Q6UWI2 310 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 PDZD4Q76G19 769 aaPredicted RBP13.58□□□□□ -0.24
PNKP-217ENST00000625216 EFCAB13Q8IY85 973 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 SIX5Q8N196 739 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 GPD1LQ8N335 351 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 PRSS33Q8NF86 280 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 ANP32BQ92688 251 aaKnown RBP13.58□□□□□ -0.24
PNKP-217ENST00000625216 FGF14Q92915 247 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 SAAL1Q96ER3 474 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 BORCS6Q96GS4 357 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 ZNF560Q96MR9 790 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 CORO1BQ9BR76 489 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 CBWD1Q9BRT8 395 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 ASB3Q9Y575 518 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 C2orf16Q68DN1 1984 aa13.58□□□□□ -0.24
PNKP-217ENST00000625216 ANK1P16157 1881 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 ECI2O75521 394 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 CFHP08603 1231 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 NPR3P17342 541 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 AOC1P19801 751 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 CDC25BP30305 580 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 HOXD11P31277 338 aaPredicted RBP13.57□□□□□ -0.24
PNKP-217ENST00000625216 ALDH1A3P47895 512 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 EPHB3P54753 998 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 EPHA5P54756 1037 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 UBASH3AP57075 661 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 TFAMQ00059 246 aaKnown RBP13.57□□□□□ -0.24
PNKP-217ENST00000625216 DUSP4Q13115 394 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 PRSS36Q5K4E3 855 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 HS2ST1Q7LGA3 356 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 FAM114A1Q8IWE2 563 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 C12orf56Q8IXR9 622 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 LRRC52Q8N7C0 313 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 FLCNQ8NFG4 579 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 SHDQ96IW2 340 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 GPR88Q9GZN0 384 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 PCIF1Q9H4Z3 704 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 DMAC2Q9NW81 257 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 CEP72Q9P209 647 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 CGNQ9P2M7 1197 aaKnown RBP13.57□□□□□ -0.24
PNKP-217ENST00000625216 MAGEC2Q9UBF1 373 aaPredicted RBP13.57□□□□□ -0.24
PNKP-217ENST00000625216 ITGA11Q9UKX5 1188 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 R3HCC1Q9Y3T6 440 aaKnown RBP13.57□□□□□ -0.24
PNKP-217ENST00000625216 YIPF1Q9Y548 306 aa13.57□□□□□ -0.24
PNKP-217ENST00000625216 PIEZO1Q92508 2521 aa13.56□□□□□ -0.24
PNKP-217ENST00000625216 GOLGA8IPA6NC78 632 aa13.56□□□□□ -0.24
PNKP-217ENST00000625216 GOLGA8JA6NMD2 632 aa13.56□□□□□ -0.24
PNKP-217ENST00000625216 CETN3O15182 167 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms