RNA–Protein interactions for RNA: ENST00000601038.5

SCAF1-204, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 491 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-204ENST00000601038 TSSK4Q6SA08 328 aa18.32■□□□□ 0.52
SCAF1-204ENST00000601038 GPIHBP1Q8IV16 184 aa18.32■□□□□ 0.52
SCAF1-204ENST00000601038 SYCP3Q8IZU3 236 aa18.32■□□□□ 0.52
SCAF1-204ENST00000601038 DCLK2Q8N568 766 aa18.32■□□□□ 0.52
SCAF1-204ENST00000601038 ZSWIM2Q8NEG5 633 aa18.32■□□□□ 0.52
SCAF1-204ENST00000601038 CACTINQ8WUQ7 758 aaKnown RBP18.32■□□□□ 0.52
SCAF1-204ENST00000601038 SAAL1Q96ER3 474 aa18.32■□□□□ 0.52
SCAF1-204ENST00000601038 LRRC3BQ96PB8 259 aa18.32■□□□□ 0.52
SCAF1-204ENST00000601038 C8orf33Q9H7E9 229 aaPredicted RBP18.32■□□□□ 0.52
SCAF1-204ENST00000601038 IL21Q9HBE4 155 aa18.32■□□□□ 0.52
SCAF1-204ENST00000601038 PANK4Q9NVE7 773 aa18.32■□□□□ 0.52
SCAF1-204ENST00000601038 CDR1P51861 262 aa18.31■□□□□ 0.52
SCAF1-204ENST00000601038 KPNA1P52294 538 aaPredicted RBP18.31■□□□□ 0.52
SCAF1-204ENST00000601038 PPP2R5DQ14738 602 aa18.31■□□□□ 0.52
SCAF1-204ENST00000601038 TAF12Q16514 161 aa18.31■□□□□ 0.52
SCAF1-204ENST00000601038 ARHGAP29Q52LW3 1261 aa18.31■□□□□ 0.52
SCAF1-204ENST00000601038 EPC1Q9H2F5 836 aa18.31■□□□□ 0.52
SCAF1-204ENST00000601038 TMEM206Q9H813 350 aa18.31■□□□□ 0.52
SCAF1-204ENST00000601038 ABI2Q9NYB9 513 aaPredicted RBP18.31■□□□□ 0.52
SCAF1-204ENST00000601038 RBAKQ9NYW8 714 aaPredicted RBP18.31■□□□□ 0.52
SCAF1-204ENST00000601038 ZMYM5Q9UJ78 669 aa18.31■□□□□ 0.52
SCAF1-204ENST00000601038 AGAP1Q9UPQ3 857 aa18.31■□□□□ 0.52
SCAF1-204ENST00000601038 TCHHQ07283 1943 aa18.31■□□□□ 0.52
SCAF1-204ENST00000601038 STX6O43752 255 aa18.3■□□□□ 0.52
SCAF1-204ENST00000601038 EXTL3O43909 919 aa18.3■□□□□ 0.52
SCAF1-204ENST00000601038 TDGF1P13385 188 aa18.3■□□□□ 0.52
SCAF1-204ENST00000601038 POLR2BP30876 1174 aaKnown RBP18.3■□□□□ 0.52
SCAF1-204ENST00000601038 NASPP49321 788 aaPredicted RBP18.3■□□□□ 0.52
SCAF1-204ENST00000601038 CCR3P51677 355 aa18.3■□□□□ 0.52
SCAF1-204ENST00000601038 NRLP54845 237 aa18.3■□□□□ 0.52
SCAF1-204ENST00000601038 RALGPS2Q86X27 583 aaPredicted RBP18.3■□□□□ 0.52
SCAF1-204ENST00000601038 PDCL2Q8N4E4 241 aa18.3■□□□□ 0.52
SCAF1-204ENST00000601038 C1orf127Q8N9H9 656 aa18.3■□□□□ 0.52
SCAF1-204ENST00000601038 GIPC2Q8TF65 315 aa18.3■□□□□ 0.52
SCAF1-204ENST00000601038 GCNAQ96QF7 691 aa18.3■□□□□ 0.52
SCAF1-204ENST00000601038 CBWD1Q9BRT8 395 aa18.3■□□□□ 0.52
SCAF1-204ENST00000601038 FGFBP2Q9BYJ0 223 aa18.3■□□□□ 0.52
SCAF1-204ENST00000601038 PCDHB5Q9Y5E4 795 aa18.3■□□□□ 0.52
SCAF1-204ENST00000601038 MYBPHLA2RUH7 354 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 SLC38A8A6NNN8 435 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 TULP1O00294 542 aaPredicted RBP18.29■□□□□ 0.52
SCAF1-204ENST00000601038 PRAMEF12O95522 483 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 ITGB3P05106 788 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 CYP4F8P98187 520 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 PLCB2Q00722 1185 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 TSPY1Q01534 308 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 NFE2Q16621 373 aaPredicted RBP18.29■□□□□ 0.52
SCAF1-204ENST00000601038 CCDC65Q8IXS2 484 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 CSGALNACT2Q8N6G5 542 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 LRRC52Q8N7C0 313 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 PDILTQ8N807 584 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 CXorf38Q8TB03 319 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 BPIFB1Q8TDL5 484 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 RMDN1Q96DB5 314 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 ACBD6Q9BR61 282 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 SLC46A2Q9BY10 475 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 TMLHEQ9NVH6 421 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 NCDNQ9UBB6 729 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 ITGA11Q9UKX5 1188 aa18.29■□□□□ 0.52
SCAF1-204ENST00000601038 NUP210Q8TEM1 1887 aaPredicted RBP18.29■□□□□ 0.52
SCAF1-204ENST00000601038 GOLGA8IPA6NC78 632 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 GOLGA8JA6NMD2 632 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 SPECC1L-ADORA2AF8WAN1 911 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 KIAA0391O15091 583 aaKnown RBP18.28■□□□□ 0.52
SCAF1-204ENST00000601038 HUS1O60921 280 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 PRPF6O94906 941 aaKnown RBP18.28■□□□□ 0.52
SCAF1-204ENST00000601038 HMGA1P17096 107 aaKnown RBP18.28■□□□□ 0.52
SCAF1-204ENST00000601038 CTHP32929 405 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 CXCL12P48061 93 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 SOX9P48436 509 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 RBP5P82980 135 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 LRRC32Q14392 662 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 STK38Q15208 465 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 CMTM8Q8IZV2 173 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 TMEM86AQ8N2M4 240 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 SPEM1Q8N4L4 309 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 CELF5Q8N6W0 485 aaKnown RBP18.28■□□□□ 0.52
SCAF1-204ENST00000601038 LINC00301Q8NCQ3 95 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 SPATA18Q8TC71 538 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 LEO1Q8WVC0 666 aaPredicted RBP18.28■□□□□ 0.52
SCAF1-204ENST00000601038 SECISBP2LQ93073 1101 aaKnown RBP18.28■□□□□ 0.52
SCAF1-204ENST00000601038 ZFYVE19Q96K21 471 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 LRRC27Q9C0I9 530 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 PCIF1Q9H4Z3 704 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 PDE11AQ9HCR9 933 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 FOXD4L1Q9NU39 408 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 THG1LQ9NWX6 298 aaKnown RBP18.28■□□□□ 0.52
SCAF1-204ENST00000601038 GDAP2Q9NXN4 497 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 GTSE1Q9NYZ3 720 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 L1RE1Q9UN81 338 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 SMG5Q9UPR3 1016 aaKnown RBP18.28■□□□□ 0.52
SCAF1-204ENST00000601038 GPR179Q6PRD1 2367 aa18.28■□□□□ 0.52
SCAF1-204ENST00000601038 SOBPA7XYQ1 873 aa18.27■□□□□ 0.52
SCAF1-204ENST00000601038 K7ELQ4 463 aaPredicted RBP18.27■□□□□ 0.52
SCAF1-204ENST00000601038 PRPF40AO75400 957 aaKnown RBP18.27■□□□□ 0.52
SCAF1-204ENST00000601038 F11P03951 625 aa18.27■□□□□ 0.52
SCAF1-204ENST00000601038 NLRP12P59046 1061 aa18.27■□□□□ 0.52
SCAF1-204ENST00000601038 GAS6Q14393 721 aa18.27■□□□□ 0.52
SCAF1-204ENST00000601038 DGKKQ5KSL6 1271 aa18.27■□□□□ 0.52
SCAF1-204ENST00000601038 SCARA3Q6AZY7 606 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms