RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 ACTN4O43707 911 aaKnown RBP11.3□□□□□ -0.6
LIG1-213ENST00000596672 ATP2C2O75185 946 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 IL18RAPO95256 599 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 PRAMEF12O95522 483 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 CST3P01034 146 aaPredicted RBP11.3□□□□□ -0.6
LIG1-213ENST00000596672 HAPLN1P10915 354 aaPredicted RBP11.3□□□□□ -0.6
LIG1-213ENST00000596672 TXLNAP40222 546 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 CYP4F8P98187 520 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 GAS6Q14393 721 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 BECN1Q14457 450 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 POSTNQ15063 836 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 SOWAHAQ2M3V2 549 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 KBTBD7Q8WVZ9 684 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 PSMG2Q969U7 264 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 CHFRQ96EP1 664 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 ZNF396Q96N95 335 aaPredicted RBP11.3□□□□□ -0.6
LIG1-213ENST00000596672 ASAH2Q9NR71 780 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 INTS13Q9NVM9 706 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 C2orf42Q9NWW7 574 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 HSPBP1Q9NZL4 362 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 SERTAD1Q9UHV2 236 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 MYBPHLA2RUH7 354 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 FAM170BA6NMN3 283 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 HEPACAM2A8MVW5 462 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 GABRDO14764 452 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 TADA3O75528 432 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 F11P03951 625 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 SP9P0CG40 484 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 LMO2P25791 158 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 ABCD1P33897 745 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 AFMP43652 599 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 SOX9P48436 509 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 ASIC1P78348 528 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 FAM26FQ5R3K3 315 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 CYP4A22Q5TCH4 519 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 TXNDC11Q6PKC3 985 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 TPRG1Q6ZUI0 275 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 ARID3BQ8IVW6 561 aaPredicted RBP11.29□□□□□ -0.6
LIG1-213ENST00000596672 NELFCDQ8IXH7 590 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 CCDC65Q8IXS2 484 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 SYCP3Q8IZU3 236 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 GPD1LQ8N335 351 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 CSGALNACT2Q8N6G5 542 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 KIAA0895Q8NCT3 520 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 CLDN23Q96B33 292 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 ZFYVE19Q96K21 471 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 SLC46A2Q9BY10 475 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 ZFP14Q9HCL3 533 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 AGPAT3Q9NRZ7 376 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 TMEM30AQ9NV96 361 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 GDAP2Q9NXN4 497 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 EXOC7Q9UPT5 735 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 MYOFQ9NZM1 2061 aa11.29□□□□□ -0.6
LIG1-213ENST00000596672 OTOL1A6NHN0 477 aaPredicted RBP11.28□□□□□ -0.6
LIG1-213ENST00000596672 ZNF197O14709 1029 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 TDGF1P13385 188 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 CYP2F1P24903 491 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 GABRR2P28476 465 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 GDI1P31150 447 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 CASP4P49662 377 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 EPHB3P54753 998 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 PRKCQQ04759 706 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 BFSP1Q12934 665 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 STK4Q13043 487 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 ALCAMQ13740 583 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 UBXN2BQ14CS0 331 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 DDR2Q16832 855 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 BMT2Q1RMZ1 405 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 IQCEQ6IPM2 695 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 ARMCX5Q6P1M9 558 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 TSSK4Q6SA08 328 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 UNC13DQ70J99 1090 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 NT5DC4Q86YG4 428 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 C1orf210Q8IVY1 113 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 MFSD6LQ8IWD5 586 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 HSCBQ8IWL3 235 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 IQUBQ8NA54 791 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 RDH13Q8NBN7 331 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 TTC8Q8TAM2 541 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 NOC3LQ8WTT2 800 aaKnown RBP11.28□□□□□ -0.6
LIG1-213ENST00000596672 LEO1Q8WVC0 666 aaPredicted RBP11.28□□□□□ -0.6
LIG1-213ENST00000596672 SEPT5Q99719 369 aaPredicted RBP11.28□□□□□ -0.6
LIG1-213ENST00000596672 PI4K2AQ9BTU6 479 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 OXCT2Q9BYC2 517 aaPredicted RBP11.28□□□□□ -0.6
LIG1-213ENST00000596672 SLC39A2Q9NP94 309 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 CRTAC1Q9NQ79 661 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 ABI2Q9NYB9 513 aaPredicted RBP11.28□□□□□ -0.6
LIG1-213ENST00000596672 GTF3C4Q9UKN8 822 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 HPSEQ9Y251 543 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 CCL26Q9Y258 94 aa11.28□□□□□ -0.6
LIG1-213ENST00000596672 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.28□□□□□ -0.6
LIG1-213ENST00000596672 CNOT1A5YKK6 2376 aaKnown RBP11.28□□□□□ -0.6
LIG1-213ENST00000596672 A0A1B0GVL5 298 aa11.27□□□□□ -0.61
LIG1-213ENST00000596672 TULP1O00294 542 aaPredicted RBP11.27□□□□□ -0.61
LIG1-213ENST00000596672 EIF3DO15371 548 aaKnown RBP eCLIP11.27□□□□□ -0.61
LIG1-213ENST00000596672 PRR29P0C7W0 189 aa11.27□□□□□ -0.61
LIG1-213ENST00000596672 PSMC3P17980 439 aa11.27□□□□□ -0.61
LIG1-213ENST00000596672 ALDH1A3P47895 512 aa11.27□□□□□ -0.61
LIG1-213ENST00000596672 ME1P48163 572 aa11.27□□□□□ -0.61
LIG1-213ENST00000596672 CYP2J2P51589 502 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms