RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 ELSPBP1Q96BH3 223 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 CCDC34Q96HJ3 373 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 CGRRF1Q99675 332 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 ACBD6Q9BR61 282 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 GDPD2Q9HCC8 539 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 DDX43Q9NXZ2 648 aaKnown RBP16.41■□□□□ 0.22
TRIM28-203ENST00000593582 ABI2Q9NYB9 513 aaPredicted RBP16.41■□□□□ 0.22
TRIM28-203ENST00000593582 NOTCH4Q99466 2003 aa16.41■□□□□ 0.22
TRIM28-203ENST00000593582 TSC2P49815 1807 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 KIF20AO95235 890 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 FGF19O95750 216 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 AOC1P19801 751 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 LHX1P48742 406 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 CDR1P51861 262 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 PFKPQ01813 784 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 TEAD2Q15562 447 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 FAM78AQ5JUQ0 283 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 KRBA2Q6ZNG9 492 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 TRAPPC11Q7Z392 1133 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 TMC8Q8IU68 726 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 ADGRF2Q8IZF7 708 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 SMARCD2Q92925 531 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 SHDQ96IW2 340 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 ASB16Q96NS5 453 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 GPR88Q9GZN0 384 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 IRF2BPLQ9H1B7 796 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 SLITRK6Q9H5Y7 841 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 ZFP14Q9HCL3 533 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 PCDHB5Q9Y5E4 795 aa16.4■□□□□ 0.22
TRIM28-203ENST00000593582 A0A1W2PRU2 124 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 GOLGA6L4A6NEF3 574 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 GALR2O43603 387 aaPredicted RBP16.39■□□□□ 0.21
TRIM28-203ENST00000593582 MOSPD3O75425 235 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 ZNF202O95125 648 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 GJA1P17302 382 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 PCSK1P29120 753 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 TCF15Q12870 199 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 TAF12Q16514 161 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 SOWAHAQ2M3V2 549 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 TANGO2Q6ICL3 276 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 POTEHQ6S545 545 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 DPH6Q7L8W6 267 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 SHKBP1Q8TBC3 707 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 ZSWIM3Q96MP5 696 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 LRRC3Q9BY71 257 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 GOLPH3LQ9H4A5 285 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 TBC1D17Q9HA65 648 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 KMT2EQ8IZD2 1858 aa16.39■□□□□ 0.21
TRIM28-203ENST00000593582 PDXKO00764 312 aa16.38■□□□□ 0.21
TRIM28-203ENST00000593582 NRG2O14511 850 aaPredicted RBP16.38■□□□□ 0.21
TRIM28-203ENST00000593582 PI15O43692 258 aa16.38■□□□□ 0.21
TRIM28-203ENST00000593582 HAPLN1P10915 354 aaPredicted RBP16.38■□□□□ 0.21
TRIM28-203ENST00000593582 FCARP24071 287 aa16.38■□□□□ 0.21
TRIM28-203ENST00000593582 ACAT1P24752 427 aaKnown RBP16.38■□□□□ 0.21
TRIM28-203ENST00000593582 DPYDQ12882 1025 aa16.38■□□□□ 0.21
TRIM28-203ENST00000593582 SNW1Q13573 536 aaKnown RBP16.38■□□□□ 0.21
TRIM28-203ENST00000593582 INTS6LQ5JSJ4 861 aaKnown RBP16.38■□□□□ 0.21
TRIM28-203ENST00000593582 PHLDB3Q6NSJ2 640 aa16.38■□□□□ 0.21
TRIM28-203ENST00000593582 SLC9A9Q8IVB4 645 aa16.38■□□□□ 0.21
TRIM28-203ENST00000593582 ZSCAN18Q8TBC5 510 aaPredicted RBP16.38■□□□□ 0.21
TRIM28-203ENST00000593582 TMEM174Q8WUU8 243 aa16.38■□□□□ 0.21
TRIM28-203ENST00000593582 MMS19Q96T76 1030 aa16.38■□□□□ 0.21
TRIM28-203ENST00000593582 LPIN3Q9BQK8 851 aa16.38■□□□□ 0.21
TRIM28-203ENST00000593582 PLA2G2FQ9BZM2 168 aa16.38■□□□□ 0.21
TRIM28-203ENST00000593582 KCTD10Q9H3F6 313 aa16.38■□□□□ 0.21
TRIM28-203ENST00000593582 TMLHEQ9NVH6 421 aa16.38■□□□□ 0.21
TRIM28-203ENST00000593582 GABRDO14764 452 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 RHOBTB3O94955 611 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 PRR29P0C7W0 189 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 ATF6P18850 670 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 GABRR2P28476 465 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 TRPC3Q13507 836 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 SLC44A4Q53GD3 710 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 ARHGAP15Q53QZ3 475 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 GAREM2Q75VX8 874 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 LIMS2Q7Z4I7 341 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 OSTM1Q86WC4 334 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 GIPC2Q8TF65 315 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 GCNAQ96QF7 691 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 TRMT61BQ9BVS5 477 aaKnown RBP16.37■□□□□ 0.21
TRIM28-203ENST00000593582 ATXN3LQ9H3M9 355 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 TRPV4Q9HBA0 871 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 ZNF334Q9HCZ1 680 aaPredicted RBP16.37■□□□□ 0.21
TRIM28-203ENST00000593582 ABCB6Q9NP58 842 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 DMAC2Q9NW81 257 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 GTF3C4Q9UKN8 822 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 TCHHQ07283 1943 aa16.37■□□□□ 0.21
TRIM28-203ENST00000593582 CALUO43852 315 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-203ENST00000593582 PHACTR2O75167 634 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 CST3P01034 146 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-203ENST00000593582 NR3C1P04150 777 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 PSMC3P17980 439 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 CDC25CP30307 473 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 CASP4P49662 377 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 AP3M2P53677 418 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 STARD6P59095 220 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 TNNC1P63316 161 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 PRKCQQ04759 706 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 GRM2Q14416 872 aa16.36■□□□□ 0.21
TRIM28-203ENST00000593582 MLF2Q15773 248 aaPredicted RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms