RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 NUCB2P80303 420 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 TCF15Q12870 199 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 FAM78AQ5JUQ0 283 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 GAREM2Q75VX8 874 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 PDZD4Q76G19 769 aaPredicted RBP16.3■□□□□ 0.2
CLIP3-202ENST00000585466 SIX5Q8N196 739 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 TMEM86AQ8N2M4 240 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 SPATA18Q8TC71 538 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 PSMG2Q969U7 264 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 CCDC127Q96BQ5 260 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 HPDLQ96IR7 371 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 ZNF512Q96ME7 567 aaPredicted RBP16.3■□□□□ 0.2
CLIP3-202ENST00000585466 LPIN3Q9BQK8 851 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 ACBD6Q9BR61 282 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 XYLT2Q9H1B5 865 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 ASAH2Q9NR71 780 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 SNX9Q9Y5X1 595 aa16.3■□□□□ 0.2
CLIP3-202ENST00000585466 KIF26AQ9ULI4 1882 aaPredicted RBP16.29■□□□□ 0.2
CLIP3-202ENST00000585466 PDXKO00764 312 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 TNNC2P02585 160 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 HAPLN1P10915 354 aaPredicted RBP16.29■□□□□ 0.2
CLIP3-202ENST00000585466 ACAT1P24752 427 aaKnown RBP16.29■□□□□ 0.2
CLIP3-202ENST00000585466 PLD1Q13393 1074 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 KCNB1Q14721 858 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 INTS6LQ5JSJ4 861 aaKnown RBP16.29■□□□□ 0.2
CLIP3-202ENST00000585466 C1orf220Q5T0J3 134 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 ASTLQ6HA08 431 aaPredicted RBP16.29■□□□□ 0.2
CLIP3-202ENST00000585466 TANGO2Q6ICL3 276 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 DNAJB7Q7Z6W7 309 aaPredicted RBP16.29■□□□□ 0.2
CLIP3-202ENST00000585466 ADGRF2Q8IZF7 708 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 THEM5Q8N1Q8 247 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 ELMOD1Q8N336 334 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 LEMD2Q8NC56 503 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 GOLGA5Q8TBA6 731 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 PARD3BQ8TEW8 1205 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 C2orf15Q8WU43 125 aaKnown RBP16.29■□□□□ 0.2
CLIP3-202ENST00000585466 ASB16Q96NS5 453 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 IL21Q9HBE4 155 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 DDX43Q9NXZ2 648 aaKnown RBP16.29■□□□□ 0.2
CLIP3-202ENST00000585466 TRAF3IP3Q9Y228 551 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 F5P12259 2224 aa16.29■□□□□ 0.2
CLIP3-202ENST00000585466 SHISA7A6NL88 538 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 LRRIQ3A6PVS8 624 aaPredicted RBP16.28■□□□□ 0.2
CLIP3-202ENST00000585466 ZNF197O14709 1029 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 PI15O43692 258 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 EXOC3O60645 756 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 HUS1O60921 280 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 NR3C1P04150 777 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 MYL4P12829 197 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 GPR15P49685 360 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 CLCN5P51795 746 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 EPHB3P54753 998 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 SMARCB1Q12824 385 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 TEAD2Q15562 447 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 ZCWPW2Q504Y3 356 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 STXBP5Q5T5C0 1151 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 CYP4A22Q5TCH4 519 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 TDRD10Q5VZ19 366 aaKnown RBP16.28■□□□□ 0.2
CLIP3-202ENST00000585466 IQCEQ6IPM2 695 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 DPH6Q7L8W6 267 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 SPPL2BQ8TCT7 592 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 RSPRY1Q96DX4 576 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 TRPV4Q9HBA0 871 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 CA14Q9ULX7 337 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 ASB3Q9Y575 518 aa16.28■□□□□ 0.2
CLIP3-202ENST00000585466 A0A1W2PRU2 124 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 TULP1O00294 542 aaPredicted RBP16.27■□□□□ 0.2
CLIP3-202ENST00000585466 PRPF40AO75400 957 aaKnown RBP16.27■□□□□ 0.2
CLIP3-202ENST00000585466 VNN1O95497 513 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 STAU1O95793 577 aaKnown RBP16.27■□□□□ 0.2
CLIP3-202ENST00000585466 C4BPAP04003 597 aaKnown RBP16.27■□□□□ 0.2
CLIP3-202ENST00000585466 HMGA1P17096 107 aaKnown RBP16.27■□□□□ 0.2
CLIP3-202ENST00000585466 TNNI1P19237 187 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 AOC1P19801 751 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 WARSP23381 471 aaKnown RBP16.27■□□□□ 0.2
CLIP3-202ENST00000585466 LMO2P25791 158 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 ALDH1A3P47895 512 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 TUFMP49411 452 aaKnown RBP16.27■□□□□ 0.2
CLIP3-202ENST00000585466 MCCD1P59942 119 aaPredicted RBP16.27■□□□□ 0.2
CLIP3-202ENST00000585466 DLG4P78352 724 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 NHLH1Q02575 133 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 MYO1EQ12965 1108 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 NFIL3Q16649 462 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 FAM171BQ6P995 826 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 TMEM150AQ86TG1 271 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 DCP1BQ8IZD4 617 aaKnown RBP16.27■□□□□ 0.2
CLIP3-202ENST00000585466 GUF1Q8N442 669 aaKnown RBP16.27■□□□□ 0.2
CLIP3-202ENST00000585466 SPATA20Q8TB22 786 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 ELSPBP1Q96BH3 223 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 FNBP1Q96RU3 617 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 SEPT5Q99719 369 aaPredicted RBP16.27■□□□□ 0.2
CLIP3-202ENST00000585466 CRTAC1Q9NQ79 661 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 ARHGEF3Q9NR81 526 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 ABI2Q9NYB9 513 aaPredicted RBP16.27■□□□□ 0.2
CLIP3-202ENST00000585466 FBXL21Q9UKT6 434 aa16.27■□□□□ 0.2
CLIP3-202ENST00000585466 DMDP11532 3685 aa16.26■□□□□ 0.19
CLIP3-202ENST00000585466 TICRRQ7Z2Z1 1910 aa16.26■□□□□ 0.19
CLIP3-202ENST00000585466 ANAPC1Q9H1A4 1944 aa16.26■□□□□ 0.19
CLIP3-202ENST00000585466 MYBPHLA2RUH7 354 aa16.26■□□□□ 0.19
CLIP3-202ENST00000585466 ATP2C2O75185 946 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms