RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 ABI2Q9NYB9 513 aaPredicted RBP13.3□□□□□ -0.28
SS18-225ENST00000585121 SIX4Q9UIU6 781 aa13.3□□□□□ -0.28
SS18-225ENST00000585121 L1RE1Q9UN81 338 aa13.3□□□□□ -0.28
SS18-225ENST00000585121 DOCK6Q96HP0 2047 aa13.3□□□□□ -0.28
SS18-225ENST00000585121 FAM237AA0A1B0GTK4 181 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 KRBA1A5PL33 1030 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 KLRC4O43908 158 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 RPN1P04843 607 aaKnown RBP13.29□□□□□ -0.28
SS18-225ENST00000585121 NPR3P17342 541 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 STK4Q13043 487 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 ARHGAP15Q53QZ3 475 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 FAM78AQ5JUQ0 283 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 TANGO2Q6ICL3 276 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 PHLDB3Q6NSJ2 640 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 TRAPPC11Q7Z392 1133 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 ADGRF2Q8IZF7 708 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 OR5B17Q8NGF7 314 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 E2F7Q96AV8 911 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 CCDC127Q96BQ5 260 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 CHAMP1Q96JM3 812 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 CGRRF1Q99675 332 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 DNAJC25Q9H1X3 360 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 PIEZO1Q92508 2521 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 A0A1W2PRU2 124 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 SOAT2O75908 522 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 PRKCQQ04759 706 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 TCF15Q12870 199 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 TRPC3Q13507 836 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 TEAD2Q15562 447 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 SLC44A4Q53GD3 710 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 CWF19L1Q69YN2 538 aaKnown RBP13.29□□□□□ -0.28
SS18-225ENST00000585121 LRRTM3Q86VH5 581 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 TTC9BQ8N6N2 239 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 CXorf38Q8TB03 319 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 SHKBP1Q8TBC3 707 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 ATOH1Q92858 354 aaPredicted RBP13.29□□□□□ -0.28
SS18-225ENST00000585121 FAM84AQ96KN4 292 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 ASB16Q96NS5 453 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 MMS19Q96T76 1030 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 TRMT61BQ9BVS5 477 aaKnown RBP13.29□□□□□ -0.28
SS18-225ENST00000585121 ATXN3LQ9H3M9 355 aa13.29□□□□□ -0.28
SS18-225ENST00000585121 WDFY4Q6ZS81 3184 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 SCN1AP35498 2009 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 PDXKO00764 312 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 CALUO43852 315 aaPredicted RBP13.28□□□□□ -0.28
SS18-225ENST00000585121 PHACTR2O75167 634 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 CLSTN1O94985 981 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 HAPLN1P10915 354 aaPredicted RBP13.28□□□□□ -0.28
SS18-225ENST00000585121 GJA1P17302 382 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 GABRR2P28476 465 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 CDC25CP30307 473 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 AP3M2P53677 418 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 RPL10AP62906 217 aaKnown RBP13.28□□□□□ -0.28
SS18-225ENST00000585121 SNW1Q13573 536 aaKnown RBP13.28□□□□□ -0.28
SS18-225ENST00000585121 MLF2Q15773 248 aaPredicted RBP13.28□□□□□ -0.28
SS18-225ENST00000585121 INTS6LQ5JSJ4 861 aaKnown RBP13.28□□□□□ -0.28
SS18-225ENST00000585121 KRBA2Q6ZNG9 492 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 TMC8Q8IU68 726 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 YAF2Q8IY57 180 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 KIAA0895Q8NCT3 520 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 ZSCAN18Q8TBC5 510 aaPredicted RBP13.28□□□□□ -0.28
SS18-225ENST00000585121 GIPC2Q8TF65 315 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 DEPDC1BQ8WUY9 529 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 LPIN3Q9BQK8 851 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 BRD9Q9H8M2 597 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 SIT1Q9Y3P8 196 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 ANK1P16157 1881 aa13.28□□□□□ -0.28
SS18-225ENST00000585121 PTPRJQ12913 1337 aa13.27□□□□□ -0.28
SS18-225ENST00000585121 CACNA1HO95180 2353 aa13.27□□□□□ -0.28
SS18-225ENST00000585121 DPYSL4O14531 572 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 PI15O43692 258 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 MOSPD3O75425 235 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 ZNF202O95125 648 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 PSMC3P17980 439 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 CDR1P51861 262 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 STARD6P59095 220 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 TNNC1P63316 161 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 MAPRE1Q15691 268 aaKnown RBP13.27□□□□□ -0.29
SS18-225ENST00000585121 SOWAHAQ2M3V2 549 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 C4orf50Q6ZRC1 276 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 SPATA2LQ8IUW3 424 aaPredicted RBP13.27□□□□□ -0.29
SS18-225ENST00000585121 SLC9A9Q8IVB4 645 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 DTWD2Q8NBA8 298 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 IRF7Q92985 503 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 SYAP1Q96A49 352 aaPredicted RBP13.27□□□□□ -0.29
SS18-225ENST00000585121 ZSWIM3Q96MP5 696 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 PI4K2AQ9BTU6 479 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 LRRC3Q9BY71 257 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 PLA2G2FQ9BZM2 168 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 SNX25Q9H3E2 840 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 TRPV4Q9HBA0 871 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 GDPD2Q9HCC8 539 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 ABCB6Q9NP58 842 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 ZMYM5Q9UJ78 669 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 FRMD4BQ9Y2L6 1034 aa13.27□□□□□ -0.29
SS18-225ENST00000585121 H0Y858 1186 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 GABRDO14764 452 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 ZNF263O14978 683 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 RHOBTB3O94955 611 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 FAM163BP0C2L3 166 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms