RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 LIG3P49916 1009 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 ZNF131P52739 623 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 NPEPPSP55786 919 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 MAPK8IP2Q13387 824 aaPredicted RBP3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 NCAPHQ15003 741 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 PCBP1Q15365 356 aaKnown RBP eCLIP3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 KCNA10Q16322 511 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 BBS9Q3SYG4 887 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 SPDYE7PQ495Y7 208 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 KLHL35Q6PF15 583 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 LRRC69Q6ZNQ3 347 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 CDR2LQ86X02 465 aaPredicted RBP3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 TBC1D10CQ8IV04 446 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 ADGRF2Q8IZF7 708 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 CASP10Q92851 521 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 PSMB7Q99436 277 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 STK33Q9BYT3 514 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 GPR88Q9GZN0 384 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 SLC32A1Q9H598 525 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 RABEP2Q9H5N1 569 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 FANCEQ9HB96 536 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 ZFP14Q9HCL3 533 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 RAD18Q9NS91 495 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 SOHLH2Q9NX45 425 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 PSD3Q9NYI0 1048 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 PKD2L2Q9NZM6 624 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 TBC1D14Q9P2M4 693 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 VPS9D1Q9Y2B5 631 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 ZNF541Q9H0D2 1346 aa3.08□□□□□ -1.92
SMCHD1-203ENST00000577880 VIRMAQ69YN4 1812 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TMEM265A0A087WTH1 108 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 HEATR9A2RTY3 570 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 MTSS1O43312 755 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 LGR5O75473 907 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TOM1L1O75674 476 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ITGB3P05106 788 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 MYBL1P10243 752 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CYP2A6P11509 494 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 MSH2P43246 934 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 VEGFBP49765 207 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 RENBPP51606 427 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 DGKEP52429 567 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 NCKAP1LP55160 1127 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CDH6P55285 790 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 RWDD2BP57060 319 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 DBN1Q16643 649 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 FBXO47Q5MNV8 452 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 MAP3K21Q5TCX8 1036 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 PCNX4Q63HM2 1172 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 PATL1Q86TB9 770 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ZSCAN30Q86W11 494 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 MMGT1Q8N4V1 131 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TSTD1Q8NFU3 115 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CXorf40AQ8TE69 158 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 AFAP1L1Q8TED9 768 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 SYT15Q9BQS2 421 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CNPPD1Q9BV87 410 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 WDCPQ9H6R7 721 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ZDHHC4Q9NPG8 344 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 RNF186Q9NXI6 227 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 DEC1Q9P2X7 70 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 PCDHA7Q9UN72 937 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 FZD1Q9UP38 647 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 HYOU1Q9Y4L1 999 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 STK36Q9NRP7 1315 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 MYO9BQ13459 2157 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 NEDD4P46934 1319 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ABHD14A-ACY1A0A1B0GW23 586 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 A0A1W2PQ27 194 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 A0A1W2PQ64 194 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 A0A1W2PQD8 194 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CCDC78A2IDD5 438 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 LRRC72A6NJI9 287 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 GNGT2O14610 69 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TRIM66O15016 1216 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 EXTL3O43909 919 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 RHOXF2BP0C7M4 288 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TCP1P17987 556 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 EIF4BP23588 611 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CHRNA3P32297 505 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 RAP1GDS1P52306 607 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 HPCAP84074 193 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 COASYQ13057 564 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CCINQ13939 588 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CCNG2Q16589 344 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CYB5D1Q6P9G0 228 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 NRSN1Q8IZ57 195 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ATP11CQ8NB49 1132 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 PPHLN1Q8NEY8 458 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 GIPC2Q8TF65 315 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ZNF296Q8WUU4 475 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 DEPDC1BQ8WUY9 529 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ACDQ96AP0 544 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 MCUR1Q96AQ8 359 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CCDC124Q96CT7 223 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 HES6Q96HZ4 224 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CALR3Q96L12 384 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 PGLYRP2Q96PD5 576 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms