RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 NIPA2Q8N8Q9 360 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 CEP120Q8N960 986 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 COPS5Q92905 334 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 ZNF668Q96K58 619 aaPredicted RBP10.66□□□□□ -0.7
VPS53-220ENST00000576149 INO80BQ9C086 356 aaPredicted RBP10.66□□□□□ -0.7
VPS53-220ENST00000576149 INTS9Q9NV88 658 aaKnown RBP10.66□□□□□ -0.7
VPS53-220ENST00000576149 DNAJC17Q9NVM6 304 aaKnown RBP10.66□□□□□ -0.7
VPS53-220ENST00000576149 NINJ2Q9NZG7 142 aa10.66□□□□□ -0.7
VPS53-220ENST00000576149 FSBPO95073 299 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 PTPN7P35236 360 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 OSTNP61366 133 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 YWHAEP62258 255 aaKnown RBP10.65□□□□□ -0.7
VPS53-220ENST00000576149 MBTD1Q05BQ5 628 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 MOGSQ13724 837 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 TMEM63BQ5T3F8 832 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 HIBCHQ6NVY1 386 aaPredicted RBP10.65□□□□□ -0.7
VPS53-220ENST00000576149 SCARA5Q6ZMJ2 495 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 SPOCD1Q6ZMY3 1216 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 CACNA2D3Q8IZS8 1091 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 PWWP2AQ96N64 755 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 CDT1Q9H211 546 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 MINDY3Q9H8M7 445 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 DNPEPQ9ULA0 475 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 TNFSF13BQ9Y275 285 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 CEP83Q9Y592 693 aa10.65□□□□□ -0.7
VPS53-220ENST00000576149 ASAP2O43150 1006 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 IL18RAPO95256 599 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 TXNP10599 105 aaKnown RBP10.65□□□□□ -0.71
VPS53-220ENST00000576149 VASPP50552 380 aaPredicted RBP10.65□□□□□ -0.71
VPS53-220ENST00000576149 CLCN3P51790 818 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 PPIL2Q13356 520 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 CNGA2Q16280 664 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 ZFYVE27Q5T4F4 411 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 RNF187Q5TA31 235 aaPredicted RBP10.65□□□□□ -0.71
VPS53-220ENST00000576149 KAZNQ674X7 775 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 TXNRD3NBQ6F5E7 133 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 GSTA5Q7RTV2 222 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 CDR2LQ86X02 465 aaPredicted RBP10.65□□□□□ -0.71
VPS53-220ENST00000576149 CCHCR1Q8TD31 782 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 CABS1Q96KC9 395 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 NFKBIZQ9BYH8 718 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 FOXP3Q9BZS1 431 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 LHX5Q9H2C1 402 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 RPF1Q9H9Y2 349 aaKnown RBP10.65□□□□□ -0.71
VPS53-220ENST00000576149 DDX56Q9NY93 547 aaKnown RBP10.65□□□□□ -0.71
VPS53-220ENST00000576149 NXF1Q9UBU9 619 aaKnown RBP10.65□□□□□ -0.71
VPS53-220ENST00000576149 STRIP2Q9ULQ0 834 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 POLIQ9UNA4 740 aa10.65□□□□□ -0.71
VPS53-220ENST00000576149 hCG_1818297A0A087WSY0 165 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 IQCF3P0C7M6 154 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 ATF7P17544 494 aaPredicted RBP10.64□□□□□ -0.71
VPS53-220ENST00000576149 ATP5DP30049 168 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 LACTBP83111 547 aaPredicted RBP10.64□□□□□ -0.71
VPS53-220ENST00000576149 P3H1Q32P28 736 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 CCDC38Q502W7 563 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 EAPPQ56P03 285 aaPredicted RBP10.64□□□□□ -0.71
VPS53-220ENST00000576149 TFDP3Q5H9I0 405 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 CYP4A22Q5TCH4 519 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 CHADLQ6NUI6 762 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 DENND1BQ6P3S1 775 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 MOB2Q70IA6 237 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 PRUNE1Q86TP1 453 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 TMEM192Q8IY95 271 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 ZCCHC9Q8N567 271 aaKnown RBP10.64□□□□□ -0.71
VPS53-220ENST00000576149 ARHGEF2Q92974 986 aaKnown RBP10.64□□□□□ -0.71
VPS53-220ENST00000576149 ZBTB10Q96DT7 871 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 FAXDC2Q96IV6 333 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 PRMT1Q99873 361 aaKnown RBP10.64□□□□□ -0.71
VPS53-220ENST00000576149 BCO2Q9BYV7 579 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 MROH8Q9H579 483 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 PDGFCQ9NRA1 345 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 SIX4Q9UIU6 781 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 DRG1Q9Y295 367 aaKnown RBP10.64□□□□□ -0.71
VPS53-220ENST00000576149 C22orf31O95567 290 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 CXCL8P10145 99 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 POLR2BP30876 1174 aaKnown RBP10.64□□□□□ -0.71
VPS53-220ENST00000576149 CDKN2BP42772 138 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 TTLL4Q14679 1199 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 PTPN20Q4JDL3 420 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 ZNF667Q5HYK9 610 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 CEP128Q6ZU80 1094 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 POLNQ7Z5Q5 900 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 ALLCQ8N6M5 410 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 GLIS1Q8NBF1 620 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 FHDC1Q9C0D6 1143 aaPredicted RBP10.64□□□□□ -0.71
VPS53-220ENST00000576149 RNPEPQ9H4A4 650 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 IFT122Q9HBG6 1241 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 ZNF148Q9UQR1 794 aa10.64□□□□□ -0.71
VPS53-220ENST00000576149 SIGLEC16A6NMB1 481 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 VGLL3A8MV65 326 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 GPR25O00155 361 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 DNALI1O14645 258 aaPredicted RBP10.63□□□□□ -0.71
VPS53-220ENST00000576149 MED7O43513 233 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 KRT19P08727 400 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 CD19P15391 556 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 OSBPP22059 807 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 RFC1P35251 1148 aaPredicted RBP10.63□□□□□ -0.71
VPS53-220ENST00000576149 RAP1GAPP47736 663 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 RAD23BP54727 409 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 POU5F1BQ06416 359 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms