RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 GPR88Q9GZN0 384 aa19.52■□□□□ 0.72
CHD3-214ENST00000572579 TNMDQ9H2S6 317 aa19.52■□□□□ 0.72
CHD3-214ENST00000572579 ATXN3LQ9H3M9 355 aa19.52■□□□□ 0.72
CHD3-214ENST00000572579 SLITRK6Q9H5Y7 841 aa19.52■□□□□ 0.72
CHD3-214ENST00000572579 OTOGLQ3ZCN5 2332 aa19.52■□□□□ 0.71
CHD3-214ENST00000572579 DMXL1Q9Y485 3027 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 TULP1O00294 542 aaPredicted RBP19.51■□□□□ 0.71
CHD3-214ENST00000572579 TGFB1I1O43294 461 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 LMNAP02545 664 aaKnown RBP19.51■□□□□ 0.71
CHD3-214ENST00000572579 TDGF1P13385 188 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 ACAT1P24752 427 aaKnown RBP19.51■□□□□ 0.71
CHD3-214ENST00000572579 RPS9P46781 194 aaKnown RBP19.51■□□□□ 0.71
CHD3-214ENST00000572579 SOX9P48436 509 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 TUFMP49411 452 aaKnown RBP19.51■□□□□ 0.71
CHD3-214ENST00000572579 CSTF1Q05048 431 aaKnown RBP19.51■□□□□ 0.71
CHD3-214ENST00000572579 EHHADHQ08426 723 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 GAS6Q14393 721 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 SV2CQ496J9 727 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 GPR158Q5T848 1215 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 SDHAF4Q5VUM1 108 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 CNNM4Q6P4Q7 775 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 LIMS2Q7Z4I7 341 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 METTL23Q86XA0 190 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 CCDC65Q8IXS2 484 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 THEM5Q8N1Q8 247 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 SUMF1Q8NBK3 374 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 DHX58Q96C10 678 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 ZFYVE19Q96K21 471 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 MTMR12Q9C0I1 747 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 SMG9Q9H0W8 520 aaKnown RBP19.51■□□□□ 0.71
CHD3-214ENST00000572579 ABI2Q9NYB9 513 aaPredicted RBP19.51■□□□□ 0.71
CHD3-214ENST00000572579 NDRG2Q9UN36 371 aaKnown RBP19.51■□□□□ 0.71
CHD3-214ENST00000572579 PIAS3Q9Y6X2 628 aa19.51■□□□□ 0.71
CHD3-214ENST00000572579 DNAH14Q0VDD8 3507 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 ZNF263O14978 683 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 CUTAO60888 179 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 YEATS4O95619 227 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 CHRNB1P11230 501 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 CCNE1P24864 410 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 ALCAMQ13740 583 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 TXNDC11Q6PKC3 985 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 RIN3Q8TB24 985 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 FAM3CQ92520 227 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 C7orf25Q9BPX7 421 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 GZF1Q9H116 711 aaPredicted RBP19.5■□□□□ 0.71
CHD3-214ENST00000572579 SEMA4AQ9H3S1 761 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 TMEM206Q9H813 350 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 GDAP2Q9NXN4 497 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 FBXO4Q9UKT5 387 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 TSC2P49815 1807 aa19.5■□□□□ 0.71
CHD3-214ENST00000572579 COL4A2P08572 1712 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 GABRDO14764 452 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 CHADO15335 359 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 LAMTOR5O43504 91 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 LDHAP00338 332 aaKnown RBP19.49■□□□□ 0.71
CHD3-214ENST00000572579 F11P03951 625 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 HOXC13P31276 330 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 SOWAHAQ2M3V2 549 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 ZNF528Q3MIS6 628 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 ITIH5Q86UX2 942 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 GPD1LQ8N335 351 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 DCLK2Q8N568 766 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 LRRC52Q8N7C0 313 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 TTC8Q8TAM2 541 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 ZNF507Q8TCN5 953 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 KCNG4Q8TDN1 519 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 ZNF396Q96N95 335 aaPredicted RBP19.49■□□□□ 0.71
CHD3-214ENST00000572579 PI4K2AQ9BTU6 479 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 TASP1Q9H6P5 420 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 LMAN1LQ9HAT1 526 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 PRMT8Q9NR22 394 aaPredicted RBP19.49■□□□□ 0.71
CHD3-214ENST00000572579 INTS13Q9NVM9 706 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 PCDHA7Q9UN72 937 aa19.49■□□□□ 0.71
CHD3-214ENST00000572579 MAN2B1O00754 1011 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 ZSCAN22P10073 491 aaPredicted RBP19.48■□□□□ 0.71
CHD3-214ENST00000572579 CYP2F1P24903 491 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 LMO2P25791 158 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 WEE1P30291 646 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 PNPLA4P41247 253 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 RBP5P82980 135 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 TNK2Q07912 1038 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 SMARCB1Q12824 385 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 BFSP1Q12934 665 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 DDR2Q16832 855 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 ZBTB44Q8NCP5 570 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 FAM200AQ8TCP9 573 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 SPPL2BQ8TCT7 592 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 NOC3LQ8WTT2 800 aaKnown RBP19.48■□□□□ 0.71
CHD3-214ENST00000572579 C2orf15Q8WU43 125 aaKnown RBP19.48■□□□□ 0.71
CHD3-214ENST00000572579 CACTINQ8WUQ7 758 aaKnown RBP19.48■□□□□ 0.71
CHD3-214ENST00000572579 SCFD1Q8WVM8 642 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 CHAMP1Q96JM3 812 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 ZNF560Q96MR9 790 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 ACBD6Q9BR61 282 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 BLZF1Q9H2G9 400 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 CHRDQ9H2X0 955 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 C2orf42Q9NWW7 574 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 DDX43Q9NXZ2 648 aaKnown RBP19.48■□□□□ 0.71
CHD3-214ENST00000572579 GTSE1Q9NYZ3 720 aa19.48■□□□□ 0.71
CHD3-214ENST00000572579 HSPBP1Q9NZL4 362 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms