RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 GZF1Q9H116 711 aaPredicted RBP21.81■■□□□ 1.08
CLK3-225ENST00000569063 DDX43Q9NXZ2 648 aaKnown RBP21.81■■□□□ 1.08
CLK3-225ENST00000569063 KRBA1A5PL33 1030 aa21.8■■□□□ 1.08
CLK3-225ENST00000569063 PDXKO00764 312 aa21.8■■□□□ 1.08
CLK3-225ENST00000569063 NRG2O14511 850 aaPredicted RBP21.8■■□□□ 1.08
CLK3-225ENST00000569063 GABRDO14764 452 aa21.8■■□□□ 1.08
CLK3-225ENST00000569063 SOAT2O75908 522 aa21.8■■□□□ 1.08
CLK3-225ENST00000569063 RHOBTB3O94955 611 aa21.8■■□□□ 1.08
CLK3-225ENST00000569063 LHX1P48742 406 aa21.8■■□□□ 1.08
CLK3-225ENST00000569063 TSPY1Q01534 308 aa21.8■■□□□ 1.08
CLK3-225ENST00000569063 SOWAHAQ2M3V2 549 aa21.8■■□□□ 1.08
CLK3-225ENST00000569063 MGAT5BQ3V5L5 792 aa21.8■■□□□ 1.08
CLK3-225ENST00000569063 CWF19L1Q69YN2 538 aaKnown RBP21.8■■□□□ 1.08
CLK3-225ENST00000569063 DNAJB7Q7Z6W7 309 aaPredicted RBP21.8■■□□□ 1.08
CLK3-225ENST00000569063 ITIH5Q86UX2 942 aa21.8■■□□□ 1.08
CLK3-225ENST00000569063 PRSS33Q8NF86 280 aa21.8■■□□□ 1.08
CLK3-225ENST00000569063 CCDC47Q96A33 483 aaKnown RBP21.8■■□□□ 1.08
CLK3-225ENST00000569063 ELSPBP1Q96BH3 223 aa21.8■■□□□ 1.08
CLK3-225ENST00000569063 SEPT5Q99719 369 aaPredicted RBP21.8■■□□□ 1.08
CLK3-225ENST00000569063 HAPLN1P10915 354 aaPredicted RBP21.79■■□□□ 1.08
CLK3-225ENST00000569063 MYL7Q01449 175 aa21.79■■□□□ 1.08
CLK3-225ENST00000569063 NFE2Q16621 373 aaPredicted RBP21.79■■□□□ 1.08
CLK3-225ENST00000569063 FAM78AQ5JUQ0 283 aa21.79■■□□□ 1.08
CLK3-225ENST00000569063 ADGRF2Q8IZF7 708 aa21.79■■□□□ 1.08
CLK3-225ENST00000569063 FLCNQ8NFG4 579 aa21.79■■□□□ 1.08
CLK3-225ENST00000569063 SHKBP1Q8TBC3 707 aa21.79■■□□□ 1.08
CLK3-225ENST00000569063 ZNF516Q92618 1163 aa21.79■■□□□ 1.08
CLK3-225ENST00000569063 ZSWIM3Q96MP5 696 aa21.79■■□□□ 1.08
CLK3-225ENST00000569063 ASB16Q96NS5 453 aa21.79■■□□□ 1.08
CLK3-225ENST00000569063 PKMYT1Q99640 499 aa21.79■■□□□ 1.08
CLK3-225ENST00000569063 GPR88Q9GZN0 384 aa21.79■■□□□ 1.08
CLK3-225ENST00000569063 TMLHEQ9NVH6 421 aa21.79■■□□□ 1.08
CLK3-225ENST00000569063 CA14Q9ULX7 337 aa21.79■■□□□ 1.08
CLK3-225ENST00000569063 PCDHB5Q9Y5E4 795 aa21.79■■□□□ 1.08
CLK3-225ENST00000569063 KIF20AO95235 890 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 FGF19O95750 216 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 CST3P01034 146 aaPredicted RBP21.78■■□□□ 1.08
CLK3-225ENST00000569063 GJA1P17302 382 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 ATF6P18850 670 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 AOC1P19801 751 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 FCARP24071 287 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 CLDN10P78369 228 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 KCNB1Q14721 858 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 VEPH1Q14D04 833 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 TEAD2Q15562 447 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 INTS6LQ5JSJ4 861 aaKnown RBP21.78■■□□□ 1.08
CLK3-225ENST00000569063 TANGO2Q6ICL3 276 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 OSTM1Q86WC4 334 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 PLA2G2FQ9BZM2 168 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 ZFP14Q9HCL3 533 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 ARHGEF3Q9NR81 526 aa21.78■■□□□ 1.08
CLK3-225ENST00000569063 ABI2Q9NYB9 513 aaPredicted RBP21.78■■□□□ 1.08
CLK3-225ENST00000569063 A0A1W2PRU2 124 aa21.77■■□□□ 1.08
CLK3-225ENST00000569063 PCSK1P29120 753 aa21.77■■□□□ 1.08
CLK3-225ENST00000569063 CDR1P51861 262 aa21.77■■□□□ 1.08
CLK3-225ENST00000569063 PTPN5P54829 565 aa21.77■■□□□ 1.08
CLK3-225ENST00000569063 TCF15Q12870 199 aa21.77■■□□□ 1.08
CLK3-225ENST00000569063 PHLDB3Q6NSJ2 640 aa21.77■■□□□ 1.08
CLK3-225ENST00000569063 FMR1NBQ8N0W7 255 aaPredicted RBP21.77■■□□□ 1.08
CLK3-225ENST00000569063 PARD3BQ8TEW8 1205 aa21.77■■□□□ 1.08
CLK3-225ENST00000569063 KBTBD7Q8WVZ9 684 aa21.77■■□□□ 1.08
CLK3-225ENST00000569063 SMARCD2Q92925 531 aa21.77■■□□□ 1.08
CLK3-225ENST00000569063 CCDC34Q96HJ3 373 aa21.77■■□□□ 1.08
CLK3-225ENST00000569063 LPIN3Q9BQK8 851 aa21.77■■□□□ 1.08
CLK3-225ENST00000569063 TRPV4Q9HBA0 871 aa21.77■■□□□ 1.08
CLK3-225ENST00000569063 ZNF334Q9HCZ1 680 aaPredicted RBP21.77■■□□□ 1.08
CLK3-225ENST00000569063 ABCB6Q9NP58 842 aa21.77■■□□□ 1.08
CLK3-225ENST00000569063 TRAF3IP3Q9Y228 551 aa21.77■■□□□ 1.08
CLK3-225ENST00000569063 PI15O43692 258 aa21.76■■□□□ 1.07
CLK3-225ENST00000569063 STAU1O95793 577 aaKnown RBP21.76■■□□□ 1.07
CLK3-225ENST00000569063 NR3C1P04150 777 aa21.76■■□□□ 1.07
CLK3-225ENST00000569063 FAM163BP0C2L3 166 aa21.76■■□□□ 1.07
CLK3-225ENST00000569063 ACAT1P24752 427 aaKnown RBP21.76■■□□□ 1.07
CLK3-225ENST00000569063 AP3M2P53677 418 aa21.76■■□□□ 1.07
CLK3-225ENST00000569063 PFKPQ01813 784 aa21.76■■□□□ 1.07
CLK3-225ENST00000569063 NHLH1Q02575 133 aa21.76■■□□□ 1.07
CLK3-225ENST00000569063 GAREM2Q75VX8 874 aa21.76■■□□□ 1.07
CLK3-225ENST00000569063 FAM200AQ8TCP9 573 aa21.76■■□□□ 1.07
CLK3-225ENST00000569063 PLEKHO2Q8TD55 490 aa21.76■■□□□ 1.07
CLK3-225ENST00000569063 GTF3C4Q9UKN8 822 aa21.76■■□□□ 1.07
CLK3-225ENST00000569063 GOLGA6L4A6NEF3 574 aa21.75■■□□□ 1.07
CLK3-225ENST00000569063 GALR2O43603 387 aaPredicted RBP21.75■■□□□ 1.07
CLK3-225ENST00000569063 CALUO43852 315 aaPredicted RBP21.75■■□□□ 1.07
CLK3-225ENST00000569063 WARSP23381 471 aaKnown RBP21.75■■□□□ 1.07
CLK3-225ENST00000569063 CASP4P49662 377 aa21.75■■□□□ 1.07
CLK3-225ENST00000569063 STARD6P59095 220 aa21.75■■□□□ 1.07
CLK3-225ENST00000569063 NFIL3Q16649 462 aa21.75■■□□□ 1.07
CLK3-225ENST00000569063 FAM171BQ6P995 826 aa21.75■■□□□ 1.07
CLK3-225ENST00000569063 ZSCAN18Q8TBC5 510 aaPredicted RBP21.75■■□□□ 1.07
CLK3-225ENST00000569063 SHDQ96IW2 340 aa21.75■■□□□ 1.07
CLK3-225ENST00000569063 PI4K2AQ9BTU6 479 aa21.75■■□□□ 1.07
CLK3-225ENST00000569063 TBC1D17Q9HA65 648 aa21.75■■□□□ 1.07
CLK3-225ENST00000569063 ZDBF2Q9HCK1 2354 aa21.74■■□□□ 1.07
CLK3-225ENST00000569063 STK25O00506 426 aa21.74■■□□□ 1.07
CLK3-225ENST00000569063 HCRTO43612 131 aa21.74■■□□□ 1.07
CLK3-225ENST00000569063 GABRR2P28476 465 aa21.74■■□□□ 1.07
CLK3-225ENST00000569063 ATICP31939 592 aa21.74■■□□□ 1.07
CLK3-225ENST00000569063 TRPC3Q13507 836 aa21.74■■□□□ 1.07
CLK3-225ENST00000569063 SNW1Q13573 536 aaKnown RBP21.74■■□□□ 1.07
CLK3-225ENST00000569063 CFAP221Q4G0U5 840 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms