RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 RTN3O95197 1032 aaPredicted RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 IL18RAPO95256 599 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 THBDP07204 575 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 SNRPB2P08579 225 aaKnown RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 SRGAP2CP0DJJ0 459 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 ZSCAN22P10073 491 aaPredicted RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 SFTPCP11686 197 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 C6P13671 934 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 P4HA1P13674 534 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 FGFR2P21802 821 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 IL4RP24394 825 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 TM4SF1P30408 202 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 HOXA10P31260 410 aaPredicted RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 CIITAP33076 1130 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 RGS2P41220 211 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 ECI1P42126 302 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 POLD2P49005 469 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 LIMK1P53667 647 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 MANFP55145 182 aaKnown RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 NLRP5P59047 1200 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 GPLD1P80108 840 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 MRPS5P82675 430 aaKnown RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 CHRNDQ07001 517 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 CUL4AQ13619 759 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 AUHQ13825 339 aaKnown RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 SLBPQ14493 270 aaKnown RBP eCLIP3.33□□□□□ -1.88
VPS35-209ENST00000568642 SMAD1Q15797 465 aaKnown RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 TBCCQ15814 346 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 TAF12Q16514 161 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 KIF4BQ2VIQ3 1234 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 CT83Q5H943 113 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 PITRM1Q5JRX3 1037 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 UBXN11Q5T124 520 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 ZNF783Q6ZMS7 281 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 NFXL1Q6ZNB6 911 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 KIAA1211Q6ZU35 1233 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 KDELC2Q7Z4H8 507 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 SLC9B2Q86UD5 537 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 CREG2Q8IUH2 290 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 NOSTRINQ8IVI9 506 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 AGGF1Q8N302 714 aaeCLIP3.33□□□□□ -1.88
VPS35-209ENST00000568642 NGEFQ8N5V2 710 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 CELF5Q8N6W0 485 aaKnown RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 PPM1NQ8N819 430 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 IPMKQ8NFU5 416 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.33□□□□□ -1.882e-9■■■□□ 17.5
VPS35-209ENST00000568642 SYTL5Q8TDW5 730 aaPredicted RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 SH3RF3Q8TEJ3 882 aaPredicted RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 ST8SIA4Q92187 359 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 MAML1Q92585 1016 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 TAF4BQ92750 862 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 EID2BQ96D98 161 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 CHFRQ96EP1 664 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 NEIL1Q96FI4 390 aaPredicted RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 ZNF764Q96H86 408 aaPredicted RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 DACH2Q96NX9 599 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 MOGAT1Q96PD6 335 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 TWNKQ96RR1 684 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 FDXACB1Q9BRP7 624 aaPredicted RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 MXD3Q9BW11 206 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 ZC3H12CQ9C0D7 883 aaKnown RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 TWSG1Q9GZX9 223 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 KCTD10Q9H3F6 313 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 IGFLR1Q9H665 355 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 IPPKQ9H8X2 491 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 CABP5Q9NP86 173 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 GPR27Q9NS67 375 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 KRT82Q9NSB4 513 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 STOML1Q9UBI4 398 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 MTRRQ9UBK8 725 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 SCOCQ9UIL1 159 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 FBXL7Q9UJT9 491 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 VPS28Q9UK41 221 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 SLC39A10Q9ULF5 831 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 TRIM33Q9UPN9 1127 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 SMC3Q9UQE7 1217 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 PIAS3Q9Y6X2 628 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 SMG6Q86US8 1419 aaKnown RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 DNAH14Q0VDD8 3507 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 CCDC66A2RUB6 948 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 F8W735 103 aaPredicted RBP3.32□□□□□ -1.88
VPS35-209ENST00000568642 GOLGA6L22H0YM25 854 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 STXBP3O00186 592 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 CAPN9O14815 690 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 KDM1AO60341 852 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 TBX10O75333 385 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 PPM1BO75688 479 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 GZMAP12544 262 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 NPR1P16066 1061 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 TNFRSF8P28908 595 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 LSP1P33241 339 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 TRPC1P48995 793 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 ALDH3A2P51648 485 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 ARFIP2P53365 341 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 ARFIP1P53367 373 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 PSMC6P62333 389 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 VAMP2P63027 116 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 AP1B1Q10567 949 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 SLC14A1Q13336 389 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 SNW1Q13573 536 aaKnown RBP3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms