RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 F8VZ95 297 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 RNF225M0QZC1 329 aaPredicted RBP9.03□□□□□ -0.96
SF3B3-212ENST00000568539 FOXN3O00409 490 aaPredicted RBP9.03□□□□□ -0.96
SF3B3-212ENST00000568539 CILPO75339 1184 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 OAZ2O95190 189 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 SOD2P04179 222 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 CD58P19256 250 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 JAM2P57087 298 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 YWHAEP62258 255 aaKnown RBP9.03□□□□□ -0.96
SF3B3-212ENST00000568539 YWHAHQ04917 246 aaPredicted RBP9.03□□□□□ -0.96
SF3B3-212ENST00000568539 RAPGEF1Q13905 1077 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 TRIM14Q14142 442 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 MRPL58Q14197 206 aaKnown RBP9.03□□□□□ -0.96
SF3B3-212ENST00000568539 DRAP1Q14919 205 aaPredicted RBP9.03□□□□□ -0.96
SF3B3-212ENST00000568539 ARHGAP44Q17R89 818 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 USP41Q3LFD5 358 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 ARSIQ5FYB1 569 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 RTP2Q5QGT7 225 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 OVOS1Q6IE37 1185 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 CACNA2D4Q7Z3S7 1137 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 OSTM1Q86WC4 334 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 METTL23Q86XA0 190 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 VPS52Q8N1B4 723 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 TTC39CQ8N584 583 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 WHAMMQ8TF30 809 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 KHSRPQ92945 711 aaKnown RBP eCLIP9.03□□□□□ -0.96
SF3B3-212ENST00000568539 TIFAQ96CG3 184 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 B3GALT6Q96L58 329 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 RTP3Q9BQQ7 232 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 TTPALQ9BTX7 342 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 HMGXB4Q9UGU5 601 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 MTUS1Q9ULD2 1270 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 BARX2Q9UMQ3 279 aaPredicted RBP9.03□□□□□ -0.96
SF3B3-212ENST00000568539 CAPN11Q9UMQ6 739 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 LZTS1Q9Y250 596 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 NME7Q9Y5B8 376 aa9.03□□□□□ -0.96
SF3B3-212ENST00000568539 LRRC53A6NM62 1247 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 H3BNC9 293 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 HCRTO43612 131 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 TBC1D4O60343 1298 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 PNMA6AP0CW24 399 aaPredicted RBP9.02□□□□□ -0.97
SF3B3-212ENST00000568539 DNAJB1P25685 340 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 LMO2P25791 158 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 CASP14P31944 242 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 GNL1P36915 607 aaPredicted RBP9.02□□□□□ -0.97
SF3B3-212ENST00000568539 LHX1P48742 406 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 GLUD2P49448 558 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 ZNF132P52740 706 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 NDST1P52848 882 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 ZBED6P86452 979 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 DSG1Q02413 1049 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 UBE3AQ05086 875 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 VARS2Q5ST30 1063 aaKnown RBP9.02□□□□□ -0.97
SF3B3-212ENST00000568539 KIAA0319Q5VV43 1072 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 PRSS55Q6UWB4 352 aaPredicted RBP9.02□□□□□ -0.97
SF3B3-212ENST00000568539 PPFIBP1Q86W92 1011 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 UNC93AQ86WB7 457 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 CEP57Q86XR8 500 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 GPR65Q8IYL9 337 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 FAM71AQ8IYT1 594 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 ZNF454Q8N9F8 522 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 OR6B3Q8NGW1 331 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 LNX1Q8TBB1 728 aaPredicted RBP9.02□□□□□ -0.97
SF3B3-212ENST00000568539 SPPL3Q8TCT6 385 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 CPLX3Q8WVH0 158 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 PIK3R5Q8WYR1 880 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 SPAG5Q96R06 1193 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 TWNKQ96RR1 684 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 ADAM33Q9BZ11 813 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 ELOVL4Q9GZR5 314 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 ZBP1Q9H171 429 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 SNX25Q9H3E2 840 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 CERS4Q9HA82 394 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 ALG13Q9NP73 1137 aaKnown RBP9.02□□□□□ -0.97
SF3B3-212ENST00000568539 PRDM6Q9NQX0 595 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 DDX43Q9NXZ2 648 aaKnown RBP9.02□□□□□ -0.97
SF3B3-212ENST00000568539 PUF60Q9UHX1 559 aaKnown RBP9.02□□□□□ -0.97
SF3B3-212ENST00000568539 MYO6Q9UM54 1294 aa9.02□□□□□ -0.97
SF3B3-212ENST00000568539 FNDC1Q4ZHG4 1894 aaPredicted RBP9.02□□□□□ -0.97
SF3B3-212ENST00000568539 A8MXQ7 604 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 GRM6O15303 877 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 LILRB3O75022 631 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 MFAP3LO75121 409 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 URODP06132 367 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 PDGFRBP09619 1106 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 CTSAP10619 480 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 KRT5P13647 590 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 ACAT1P24752 427 aaKnown RBP9.01□□□□□ -0.97
SF3B3-212ENST00000568539 PCSK1P29120 753 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 CLCN1P35523 988 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 SOX5P35711 763 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 STAT1P42224 750 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 RAD23BP54727 409 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 ERVFC1P60507 584 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 ORC1Q13415 861 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 GPM6BQ13491 265 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 CAMK1Q14012 370 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 PDCD11Q14690 1871 aaKnown RBP9.01□□□□□ -0.97
SF3B3-212ENST00000568539 ARID5BQ14865 1188 aa9.01□□□□□ -0.97
SF3B3-212ENST00000568539 CTXN3Q4LDR2 81 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms