RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 DCP1BQ8IZD4 617 aaKnown RBP17.33■□□□□ 0.37
CLN3-229ENST00000567963 PDILTQ8N807 584 aa17.33■□□□□ 0.37
CLN3-229ENST00000567963 LINC00301Q8NCQ3 95 aa17.33■□□□□ 0.37
CLN3-229ENST00000567963 CSGALNACT1Q8TDX6 532 aa17.33■□□□□ 0.37
CLN3-229ENST00000567963 CACTINQ8WUQ7 758 aaKnown RBP17.33■□□□□ 0.37
CLN3-229ENST00000567963 LRRC3BQ96PB8 259 aa17.33■□□□□ 0.37
CLN3-229ENST00000567963 CHRDQ9H2X0 955 aa17.33■□□□□ 0.37
CLN3-229ENST00000567963 LMAN1LQ9HAT1 526 aa17.33■□□□□ 0.37
CLN3-229ENST00000567963 OBP2AQ9NY56 170 aa17.33■□□□□ 0.37
CLN3-229ENST00000567963 RBAKQ9NYW8 714 aaPredicted RBP17.33■□□□□ 0.37
CLN3-229ENST00000567963 GTF3C3Q9Y5Q9 886 aa17.33■□□□□ 0.37
CLN3-229ENST00000567963 DPYSL4O14531 572 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 ITGB3P05106 788 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 HAPLN1P10915 354 aaPredicted RBP17.32■□□□□ 0.36
CLN3-229ENST00000567963 WEE1P30291 646 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 POLR2BP30876 1174 aaKnown RBP17.32■□□□□ 0.36
CLN3-229ENST00000567963 FOXK2Q01167 660 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 KIAA2013Q8IYS2 634 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 C1orf127Q8N9H9 656 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 CXorf38Q8TB03 319 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 GIPC2Q8TF65 315 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 HINFPQ9BQA5 517 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 CBWD1Q9BRT8 395 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 PCIF1Q9H4Z3 704 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 TASP1Q9H6P5 420 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 TMEM206Q9H813 350 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 IL21Q9HBE4 155 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 AGAP1Q9UPQ3 857 aa17.32■□□□□ 0.36
CLN3-229ENST00000567963 NUP210Q8TEM1 1887 aaPredicted RBP17.32■□□□□ 0.36
CLN3-229ENST00000567963 GOLGA8IPA6NC78 632 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 GOLGA8JA6NMD2 632 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 EXTL3O43909 919 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 LILRB5O75023 590 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 PRPF6O94906 941 aaKnown RBP17.31■□□□□ 0.36
CLN3-229ENST00000567963 CHRNB1P11230 501 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 CDC25CP30307 473 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 CYP4F8P98187 520 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 TAF12Q16514 161 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 SCARA3Q6AZY7 606 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 C1orf228Q6PIY5 440 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 CCDC65Q8IXS2 484 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 PDCL2Q8N4E4 241 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 DCLK2Q8N568 766 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 CSGALNACT2Q8N6G5 542 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 MSANTD3Q96H12 275 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 IER2Q9BTL4 223 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 FAM126AQ9BYI3 521 aaPredicted RBP17.31■□□□□ 0.36
CLN3-229ENST00000567963 C8orf33Q9H7E9 229 aaPredicted RBP17.31■□□□□ 0.36
CLN3-229ENST00000567963 TMLHEQ9NVH6 421 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 ABI2Q9NYB9 513 aaPredicted RBP17.31■□□□□ 0.36
CLN3-229ENST00000567963 PCDHB5Q9Y5E4 795 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 OTOGLQ3ZCN5 2332 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 KPNA1P52294 538 aaPredicted RBP17.31■□□□□ 0.36
CLN3-229ENST00000567963 STK38Q15208 465 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 ARHGAP29Q52LW3 1261 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 LRRC52Q8N7C0 313 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 ACBD6Q9BR61 282 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 SLC46A2Q9BY10 475 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 TNMDQ9H2S6 317 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 PDE11AQ9HCR9 933 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 ITGA11Q9UKX5 1188 aa17.31■□□□□ 0.36
CLN3-229ENST00000567963 MYBPHLA2RUH7 354 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 SLC38A8A6NNN8 435 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 SPTLC2O15270 562 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 HUS1O60921 280 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 PPP6R2O75170 966 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 PRAMEF12O95522 483 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 TDGF1P13385 188 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 SOX9P48436 509 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 TSPY1Q01534 308 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 PPP2R5DQ14738 602 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 E2F4Q16254 413 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 ERMP1Q7Z2K6 904 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 TMEM86AQ8N2M4 240 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 GPD1LQ8N335 351 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 BPIFB1Q8TDL5 484 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 NOC3LQ8WTT2 800 aaKnown RBP17.3■□□□□ 0.36
CLN3-229ENST00000567963 ZFYVE19Q96K21 471 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 GCNAQ96QF7 691 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 LRRC27Q9C0I9 530 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 KBTBD4Q9NVX7 518 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 GDAP2Q9NXN4 497 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 GTSE1Q9NYZ3 720 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 TFIP11Q9UBB9 837 aaKnown RBP17.3■□□□□ 0.36
CLN3-229ENST00000567963 ZMYM5Q9UJ78 669 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 L1RE1Q9UN81 338 aa17.3■□□□□ 0.36
CLN3-229ENST00000567963 DENND4CQ5VZ89 1909 aa17.29■□□□□ 0.36
CLN3-229ENST00000567963 SPECC1L-ADORA2AF8WAN1 911 aa17.29■□□□□ 0.36
CLN3-229ENST00000567963 KIAA0391O15091 583 aaKnown RBP17.29■□□□□ 0.36
CLN3-229ENST00000567963 F11P03951 625 aa17.29■□□□□ 0.36
CLN3-229ENST00000567963 KRT19P08727 400 aa17.29■□□□□ 0.36
CLN3-229ENST00000567963 HMGA1P17096 107 aaKnown RBP17.29■□□□□ 0.36
CLN3-229ENST00000567963 NRLP54845 237 aa17.29■□□□□ 0.36
CLN3-229ENST00000567963 RBP5P82980 135 aa17.29■□□□□ 0.36
CLN3-229ENST00000567963 NFE2Q16621 373 aaPredicted RBP17.29■□□□□ 0.36
CLN3-229ENST00000567963 TMEM150AQ86TG1 271 aa17.29■□□□□ 0.36
CLN3-229ENST00000567963 RALGPS2Q86X27 583 aaPredicted RBP17.29■□□□□ 0.36
CLN3-229ENST00000567963 CMTM8Q8IZV2 173 aa17.29■□□□□ 0.36
CLN3-229ENST00000567963 GLIS3Q8NEA6 775 aa17.29■□□□□ 0.36
CLN3-229ENST00000567963 LEO1Q8WVC0 666 aaPredicted RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms