RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	SCARA3	Q6AZY7	606 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	TANGO2	Q6ICL3	276 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	HS2ST1	Q7LGA3	356 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	ITIH5	Q86UX2	942 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	ALYREF	Q86V81	257 aa	Known RBP	7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	CBWD2	Q8IUF1	395 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	NELFCD	Q8IXH7	590 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	TMEM86A	Q8N2M4	240 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	PDCL2	Q8N4E4	241 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	TTC9B	Q8N6N2	239 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	XXYLT1	Q8NBI6	393 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	SCFD1	Q8WVM8	642 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	ATOH1	Q92858	354 aa	Predicted RBP	7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	SMARCD2	Q92925	531 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	PSMG2	Q969U7	264 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	HPDL	Q96IR7	371 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	CHAMP1	Q96JM3	812 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	ZSWIM3	Q96MP5	696 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	ASB16	Q96NS5	453 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	ACBD6	Q9BR61	282 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	LRRC3	Q9BY71	257 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	PLA2G2F	Q9BZM2	168 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	MTMR12	Q9C0I1	747 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	SCAND2P	Q9GZW5	306 aa	Predicted RBP	7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	CRISPLD1	Q9H336	500 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	TBC1D17	Q9HA65	648 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	TRPV4	Q9HBA0	871 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	ARHGEF3	Q9NR81	526 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	EXOC1	Q9NV70	894 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	SIX4	Q9UIU6	781 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	SIT1	Q9Y3P8	196 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635	WDFY4	Q6ZS81	3184 aa		7.44	□□□□□ -1.22
SF3B3-209	ENST00000567635		H0Y858	1186 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	NRG2	O14511	850 aa	Predicted RBP	7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	PRPF40A	O75400	957 aa	Known RBP	7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	SOAT2	O75908	522 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	HAPLN1	P10915	354 aa	Predicted RBP	7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	GJA1	P17302	382 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	TNNI1	P19237	187 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	SYK	P43405	635 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	LHX1	P48742	406 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	MRE11	P49959	708 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	CDR1	P51861	262 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	NDUFA8	P51970	172 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	STARD6	P59095	220 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	MYL7	Q01449	175 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	TSPY1	Q01534	308 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	PRKCQ	Q04759	706 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	CYP24A1	Q07973	514 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	STK4	Q13043	487 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	VEPH1	Q14D04	833 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	PSMD6	Q15008	389 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	TEAD2	Q15562	447 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	TAF12	Q16514	161 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	NFE2	Q16621	373 aa	Predicted RBP	7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	BMT2	Q1RMZ1	405 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	SOWAHA	Q2M3V2	549 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	MGAT5B	Q3V5L5	792 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	KMT5B	Q4FZB7	885 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	ARHGAP15	Q53QZ3	475 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	LMBRD2	Q68DH5	695 aa	Predicted RBP	7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	CWF19L1	Q69YN2	538 aa	Known RBP	7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	GAREM2	Q75VX8	874 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	DPH6	Q7L8W6	267 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	TRAPPC11	Q7Z392	1133 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	TMC8	Q8IU68	726 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	WDR49	Q8IV35	697 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	C12orf56	Q8IXR9	622 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	TOP6BL	Q8N6T0	577 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	DTWD2	Q8NBA8	298 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	OR5B17	Q8NGF7	314 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	GOLGA5	Q8TBA6	731 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	SHKBP1	Q8TBC3	707 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	SPATA18	Q8TC71	538 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	FAM200A	Q8TCP9	573 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	SPPL2B	Q8TCT7	592 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	E2F7	Q96AV8	911 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	FAM84A	Q96KN4	292 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	IPO9	Q96P70	1041 aa	Known RBP	7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	FNBP1	Q96RU3	617 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	SEPT5	Q99719	369 aa	Predicted RBP	7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	TRMT61B	Q9BVS5	477 aa	Known RBP	7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	DNAJC25	Q9H1X3	360 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	SLITRK6	Q9H5Y7	841 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	ABI2	Q9NYB9	513 aa	Predicted RBP	7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	L1RE1	Q9UN81	338 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	HPSE	Q9Y251	543 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	PCDHB5	Q9Y5E4	795 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	SNX9	Q9Y5X1	595 aa		7.43	□□□□□ -1.22
SF3B3-209	ENST00000567635	EP300	Q09472	2414 aa	Predicted RBP	7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	RALGAPA1	Q6GYQ0	2036 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	MYO18A	Q92614	2054 aa	Known RBP	7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	FAM237A	A0A1B0GTK4	181 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635		A0A1W2PQ27	194 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635		A0A1W2PQ64	194 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635		A0A1W2PQD8	194 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635		A0A1W2PRU2	124 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	KANSL1L	A0AUZ9	987 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	FAM170B	A6NMN3	283 aa		7.42	□□□□□ -1.22

Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms