RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 HMGXB4Q9UGU5 601 aa20.93■□□□□ 0.94
CLN3-225ENST00000566824 USP15Q9Y4E8 981 aaPredicted RBP20.93■□□□□ 0.94
CLN3-225ENST00000566824 NOTCH4Q99466 2003 aa20.93■□□□□ 0.94
CLN3-225ENST00000566824 MYBPHLA2RUH7 354 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 MTMR11A4FU01 709 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 MBTPS2O43462 519 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 ZMYND10O75800 440 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 C1RP00736 705 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 AFPP02771 609 aaKnown RBP20.92■□□□□ 0.94
CLN3-225ENST00000566824 C8AP07357 584 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 SRGAP2BP0DMP2 458 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 ATF2P15336 505 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 MTIF2P46199 727 aaKnown RBP20.92■□□□□ 0.94
CLN3-225ENST00000566824 PSMC1P62191 440 aaKnown RBP20.92■□□□□ 0.94
CLN3-225ENST00000566824 LRMPQ12912 555 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 ORC1Q13415 861 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 PTCRAQ6ISU1 281 aaPredicted RBP20.92■□□□□ 0.94
CLN3-225ENST00000566824 AOPEPQ8N6M6 819 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 ARID3AQ99856 593 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 ACBD6Q9BR61 282 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 BCO2Q9BYV7 579 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 PLEKHA4Q9H4M7 779 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 CRTAC1Q9NQ79 661 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 AFF4Q9UHB7 1163 aaKnown RBP20.92■□□□□ 0.94
CLN3-225ENST00000566824 GTF3C4Q9UKN8 822 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 SLC27A5Q9Y2P5 690 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 PTPRDP23468 1912 aa20.92■□□□□ 0.94
CLN3-225ENST00000566824 CCDC195A0A1B0GUA6 201 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 KCNJ18B7U540 433 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 SOAT2O75908 522 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 IL9P15248 144 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 HOXB8P17481 243 aaPredicted RBP20.91■□□□□ 0.94
CLN3-225ENST00000566824 GNL1P36915 607 aaPredicted RBP20.91■□□□□ 0.94
CLN3-225ENST00000566824 LHX1P48742 406 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 MRPS5P82675 430 aaKnown RBP20.91■□□□□ 0.94
CLN3-225ENST00000566824 DUSP4Q13115 394 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 KCNJ12Q14500 433 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 INTS6LQ5JSJ4 861 aaKnown RBP20.91■□□□□ 0.94
CLN3-225ENST00000566824 MIIPQ5JXC2 388 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 TPGS2Q68CL5 300 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 OR6B3Q8NGW1 331 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 HDAC7Q8WUI4 952 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 ASB2Q96Q27 587 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 SYT15Q9BQS2 421 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 OXCT2Q9BYC2 517 aaPredicted RBP20.91■□□□□ 0.94
CLN3-225ENST00000566824 NIF3L1Q9GZT8 377 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 SNX25Q9H3E2 840 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 SFXN1Q9H9B4 322 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 CYP4F11Q9HBI6 524 aa20.91■□□□□ 0.94
CLN3-225ENST00000566824 PMM2O15305 246 aa20.9■□□□□ 0.94
CLN3-225ENST00000566824 CCL16O15467 120 aa20.9■□□□□ 0.94
CLN3-225ENST00000566824 LETM1O95202 739 aaPredicted RBP20.9■□□□□ 0.94
CLN3-225ENST00000566824 BMP1P13497 986 aa20.9■□□□□ 0.94
CLN3-225ENST00000566824 MYL5Q02045 173 aa20.9■□□□□ 0.94
CLN3-225ENST00000566824 APBA1Q02410 837 aa20.9■□□□□ 0.94
CLN3-225ENST00000566824 SMAD4Q13485 552 aaKnown RBP20.9■□□□□ 0.94
CLN3-225ENST00000566824 TCP11X2Q5H9J9 407 aa20.9■□□□□ 0.94
CLN3-225ENST00000566824 DHX40Q8IX18 779 aaKnown RBP20.9■□□□□ 0.94
CLN3-225ENST00000566824 TCEAL8Q8IYN2 117 aa20.9■□□□□ 0.94
CLN3-225ENST00000566824 SPATA18Q8TC71 538 aa20.9■□□□□ 0.94
CLN3-225ENST00000566824 ATXN2LQ8WWM7 1075 aaKnown RBP20.9■□□□□ 0.94
CLN3-225ENST00000566824 SUSD6Q92537 303 aa20.9■□□□□ 0.94
CLN3-225ENST00000566824 TWNKQ96RR1 684 aa20.9■□□□□ 0.94
CLN3-225ENST00000566824 RHOBTB2Q9BYZ6 727 aa20.9■□□□□ 0.94
CLN3-225ENST00000566824 ADAM7Q9H2U9 754 aa20.9■□□□□ 0.94
CLN3-225ENST00000566824 DENND4AQ7Z401 1863 aa20.9■□□□□ 0.94
CLN3-225ENST00000566824 SPDYE4A6NLX3 237 aa20.89■□□□□ 0.93
CLN3-225ENST00000566824 PAPLNO95428 1278 aa20.89■□□□□ 0.93
CLN3-225ENST00000566824 PPM1LQ5SGD2 360 aa20.89■□□□□ 0.93
CLN3-225ENST00000566824 LIN9Q5TKA1 542 aa20.89■□□□□ 0.93
CLN3-225ENST00000566824 GPR149Q86SP6 731 aa20.89■□□□□ 0.93
CLN3-225ENST00000566824 ARHGEF19Q8IW93 802 aa20.89■□□□□ 0.93
CLN3-225ENST00000566824 WHAMMQ8TF30 809 aa20.89■□□□□ 0.93
CLN3-225ENST00000566824 KAT5Q92993 513 aa20.89■□□□□ 0.93
CLN3-225ENST00000566824 TUBGCP2Q9BSJ2 902 aa20.89■□□□□ 0.93
CLN3-225ENST00000566824 CRACR2AQ9BSW2 395 aa20.89■□□□□ 0.93
CLN3-225ENST00000566824 IMPG2Q9BZV3 1241 aa20.89■□□□□ 0.93
CLN3-225ENST00000566824 TAB2Q9NYJ8 693 aa20.89■□□□□ 0.93
CLN3-225ENST00000566824 INSL5Q9Y5Q6 135 aa20.89■□□□□ 0.93
CLN3-225ENST00000566824 A8MXQ7 604 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 PRRG1O14668 218 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 FAM163BP0C2L3 166 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 CD58P19256 250 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 NDST1P52848 882 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 NTHL1P78549 312 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 TSPY1Q01534 308 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 MAN2A1Q16706 1144 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 FAM171BQ6P995 826 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 FAM114A1Q8IWE2 563 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 EHBP1Q8NDI1 1231 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 CMASQ8NFW8 434 aaPredicted RBP20.88■□□□□ 0.93
CLN3-225ENST00000566824 PRKD2Q9BZL6 878 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 INTS2Q9H0H0 1204 aaKnown RBP20.88■□□□□ 0.93
CLN3-225ENST00000566824 HCFC1R1Q9NWW0 138 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 ABI2Q9NYB9 513 aaPredicted RBP20.88■□□□□ 0.93
CLN3-225ENST00000566824 MAGEC2Q9UBF1 373 aaPredicted RBP20.88■□□□□ 0.93
CLN3-225ENST00000566824 CDH9Q9ULB4 789 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 YIPF1Q9Y548 306 aa20.88■□□□□ 0.93
CLN3-225ENST00000566824 P4HA2O15460 535 aa20.87■□□□□ 0.93
CLN3-225ENST00000566824 N4BP1O75113 896 aaKnown RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms