RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TTC25Q96NG3 672 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 MOV10L1Q9BXT6 1211 aaKnown RBP13.92□□□□□ -0.18
CLN3-210ENST00000563874 POLR3FQ9H1D9 316 aaPredicted RBP13.92□□□□□ -0.18
CLN3-210ENST00000563874 DEFB129Q9H1M3 183 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 PARVAQ9NVD7 372 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 LOXHD1Q8IVV2 1947 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 A0A0G2JND7 137 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 PCK1P35558 622 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 MCCD1P59942 119 aaPredicted RBP13.92□□□□□ -0.18
CLN3-210ENST00000563874 SEPT7Q16181 437 aaKnown RBP13.92□□□□□ -0.18
CLN3-210ENST00000563874 SMTNL2Q2TAL5 461 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 MSS51Q4VC12 460 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 RNASEH2BQ5TBB1 312 aaKnown RBP13.92□□□□□ -0.18
CLN3-210ENST00000563874 ANKRD22Q5VYY1 191 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 RFWD3Q6PCD5 774 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 SPOCD1Q6ZMY3 1216 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 CENPUQ71F23 418 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 RCOR2Q8IZ40 523 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 OR5B17Q8NGF7 314 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 RFWD2Q8NHY2 731 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 OSBPL1AQ9BXW6 950 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 HAPLN2Q9GZV7 340 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 PSMC3IPQ9P2W1 217 aaPredicted RBP13.92□□□□□ -0.18
CLN3-210ENST00000563874 SCINQ9Y6U3 715 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 EXTL3O43909 919 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 ATP5HO75947 161 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 WFS1O76024 890 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 GARTP22102 1010 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 SFNP31947 248 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 BLMHQ13867 455 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 MTERF2Q49AM1 385 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 SYCP2LQ5T4T6 812 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 DCUN1D2Q6PH85 259 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 TDRPQ86YL5 185 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 SAMD3Q8N6K7 520 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 TMEM143Q96AN5 459 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 RBM41Q96IZ5 413 aaKnown RBP13.91□□□□□ -0.18
CLN3-210ENST00000563874 YIPF3Q9GZM5 350 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 SLC17A7Q9P2U7 560 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 AGO2Q9UKV8 859 aaKnown RBP13.91□□□□□ -0.18
CLN3-210ENST00000563874 ALOX15BO15296 676 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 GLRA2P23416 452 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 GDF10P55107 478 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 HIF1AQ16665 826 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 KCNT1Q5JUK3 1230 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 PHF13Q86YI8 300 aaPredicted RBP13.91□□□□□ -0.18
CLN3-210ENST00000563874 INPP5DQ92835 1189 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 FOXP3Q9BZS1 431 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 PXMP2Q9NR77 195 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 RBAKQ9NYW8 714 aaPredicted RBP13.91□□□□□ -0.18
CLN3-210ENST00000563874 IP6K2Q9UHH9 426 aa13.91□□□□□ -0.18
CLN3-210ENST00000563874 CLUHO75153 1309 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 MAFGO15525 162 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 PTDSS1P48651 473 aaKnown RBP13.9□□□□□ -0.18
CLN3-210ENST00000563874 NRLP54845 237 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 VCPP55072 806 aaKnown RBP13.9□□□□□ -0.18
CLN3-210ENST00000563874 MORF4L2Q15014 288 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 FNBP1LQ5T0N5 605 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 CYP4A22Q5TCH4 519 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 RHPN2Q8IUC4 686 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 TCP10LQ8TDR4 215 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 PYROXD1Q8WU10 500 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 ZNF606Q8WXB4 792 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 MIPEPQ99797 713 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 CFAP69A5D8W1 941 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 TMEM191CA6NGB0 347 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 ENO4A6NNW6 628 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 ATP2A1O14983 1001 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 TMEM191BP0C7N4 346 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 CCNG1P51959 295 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 PSMD6Q15008 389 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 OASLQ15646 514 aaKnown RBP13.9□□□□□ -0.18
CLN3-210ENST00000563874 RGS9BPQ6ZS82 235 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 C3orf62Q6ZUJ4 267 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 CLNKQ7Z7G1 428 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 CCDC60Q8IWA6 550 aaPredicted RBP13.9□□□□□ -0.18
CLN3-210ENST00000563874 PTPRN2Q92932 1015 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 PRR11Q96HE9 360 aaPredicted RBP13.9□□□□□ -0.18
CLN3-210ENST00000563874 WNK4Q96J92 1243 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 ZWILCHQ9H900 591 aa13.9□□□□□ -0.18
CLN3-210ENST00000563874 CTDP1Q9Y5B0 961 aaPredicted RBP13.9□□□□□ -0.18
CLN3-210ENST00000563874 hCG_1818297A0A087WSY0 165 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 C2orf71A6NGG8 1288 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 CTCFP49711 727 aaPredicted RBP13.89□□□□□ -0.19
CLN3-210ENST00000563874 GEMIN4P57678 1058 aaKnown RBP13.89□□□□□ -0.19
CLN3-210ENST00000563874 C1QBPQ07021 282 aaKnown RBP13.89□□□□□ -0.19
CLN3-210ENST00000563874 BAATQ14032 418 aaPredicted RBP13.89□□□□□ -0.19
CLN3-210ENST00000563874 FYB2Q5VWT5 728 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 DNAJC24Q6P3W2 148 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 CEP128Q6ZU80 1094 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 APBB1IPQ7Z5R6 666 aaPredicted RBP13.89□□□□□ -0.19
CLN3-210ENST00000563874 LRRC6Q86X45 466 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 PAFAH2Q99487 392 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 SENP1Q9P0U3 644 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 ARHGAP28Q9P2N2 729 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 KANSL3Q9P2N6 904 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 RABGEF1Q9UJ41 708 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 RIPK3Q9Y572 518 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 TCRBV7S3A2A0A539 114 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 ASNSP08243 561 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms