RNA–Protein interactions for RNA: ENST00000563485.2

HMGB1P33-201, Transcript of high mobility group box 1 pseudogene 33, humanhuman

BASIC

Gene HMGB1P33, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P33-201ENST00000563485 ITGALP20701 1170 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 PCSK6P29122 969 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 CD6P30203 668 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 GCLCP48506 637 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 SOX10P56693 466 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 SRSF4Q08170 494 aaKnown RBP4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 FAM153CQ494X1 144 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 VPS53Q5VIR6 699 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 LRCH2Q5VUJ6 765 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 USP37Q86T82 979 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 ZBTB46Q86UZ6 589 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 FAM109AQ8N4B1 249 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 DDB2Q92466 427 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 DPF1Q92782 380 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 FAM136AQ96C01 138 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 ALG8Q9BVK2 526 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 GTPBP4Q9BZE4 634 aaKnown RBP4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 INO80BQ9C086 356 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 SIK2Q9H0K1 926 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 SERHLQ9NQF3 203 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 PCDHA1Q9Y5I3 950 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 RAD54BQ9Y620 910 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 AOX1Q06278 1338 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 DNAJC9-AS1A6NH13 148 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 GNAI2P04899 355 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 ZFXP17010 805 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 DRD4P21917 467 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 ABCG1P45844 678 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 EXOSC9Q06265 439 aaKnown RBP4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 EIF2B5Q13144 721 aaKnown RBP4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 TBCCQ15814 346 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 PGS1Q32NB8 556 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 FCRLBQ6BAA4 426 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 PTF1AQ7RTS3 328 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 FAM46DQ8NEK8 389 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 KLHDC4Q8TBB5 520 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 HASPINQ8TF76 798 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 CHMP4CQ96CF2 233 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 HSPBAP1Q96EW2 488 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 KMT5AQ9NQR1 393 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 PNPOQ9NVS9 261 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 EHD3Q9NZN3 535 aa4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 COL3A1P02461 1466 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P33-201ENST00000563485 PPM1DO15297 605 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 PIM1P11309 404 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 JUPP14923 745 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 CCT8P50990 548 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 ZNF134P52741 427 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 BMPR2Q13873 1038 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 PLS1Q14651 629 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 PTPROQ16827 1216 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 FAM160B1Q5W0V3 765 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 TMEM108Q6UXF1 575 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 PCSK9Q8NBP7 692 aaKnown RBP4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 ZCRB1Q8TBF4 217 aaKnown RBP4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 ANKS1AQ92625 1134 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 DDX17Q92841 729 aaKnown RBP4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 MVB12AQ96EY5 273 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 GPATCH3Q96I76 525 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 FAM167AQ96KS9 214 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 SERTAD4Q9NUC0 356 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 PADI4Q9UM07 663 aa4.29□□□□□ -1.72
HMGB1P33-201ENST00000563485 H3BUI4 141 aa4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 DCLK1O15075 740 aa4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 DNAJB5O75953 348 aa4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 PRKCGP05129 697 aa4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 HNRNPCP07910 306 aaKnown RBP eCLIP4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 HDCP19113 662 aa4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 NKX6-1P78426 367 aaPredicted RBP4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 TMEM119Q4V9L6 283 aa4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 CCDC157Q569K6 752 aa4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 PLAC9Q5JTB6 97 aa4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 ZNF551Q7Z340 670 aaPredicted RBP4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 CELF5Q8N6W0 485 aaKnown RBP4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 BRIX1Q8TDN6 353 aaKnown RBP4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 SLC46A1Q96NT5 459 aa4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 TTYH3Q9C0H2 523 aa4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 ARHGEF3Q9NR81 526 aa4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 RNF7Q9UBF6 113 aa4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 HESX1Q9UBX0 185 aa4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 SERGEFQ9UGK8 458 aa4.28□□□□□ -1.72
HMGB1P33-201ENST00000563485 LINC01548A6NM66 108 aa4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 NXPH3O95157 252 aa4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 AKAP5P24588 427 aa4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 CLCN2P51788 898 aa4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 NEK2P51955 445 aa4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 SP2Q02086 613 aa4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 TFF2Q03403 129 aa4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 PAPD7Q5XG87 772 aaKnown RBP4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 MAVSQ7Z434 540 aa4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 GLCCI1Q86VQ1 547 aa4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 ATRIPQ8WXE1 791 aa4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 HOOK2Q96ED9 719 aa4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 SLC35A4Q96G79 324 aa4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 TCF7L1Q9HCS4 588 aa4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 IP6K2Q9UHH9 426 aa4.27□□□□□ -1.73
HMGB1P33-201ENST00000563485 PCDHA6Q9UN73 950 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms