RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 SPPL2BQ8TCT7 592 aa16.98■□□□□ 0.31
CLK3-211ENST00000563297 SAAL1Q96ER3 474 aa16.98■□□□□ 0.31
CLK3-211ENST00000563297 USP28Q96RU2 1077 aa16.98■□□□□ 0.31
CLK3-211ENST00000563297 EPC1Q9H2F5 836 aa16.98■□□□□ 0.31
CLK3-211ENST00000563297 TASP1Q9H6P5 420 aa16.98■□□□□ 0.31
CLK3-211ENST00000563297 C8orf33Q9H7E9 229 aaPredicted RBP16.98■□□□□ 0.31
CLK3-211ENST00000563297 OLFML3Q9NRN5 406 aa16.98■□□□□ 0.31
CLK3-211ENST00000563297 PCDHB13Q9Y5F0 798 aa16.98■□□□□ 0.31
CLK3-211ENST00000563297 MORC2Q9Y6X9 1032 aaPredicted RBP16.98■□□□□ 0.31
CLK3-211ENST00000563297 DENND4CQ5VZ89 1909 aa16.98■□□□□ 0.31
CLK3-211ENST00000563297 NUP210Q8TEM1 1887 aaPredicted RBP16.97■□□□□ 0.31
CLK3-211ENST00000563297 CACNA1AO00555 2505 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 FRMD3A2A2Y4 597 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 SLC38A8A6NNN8 435 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 PRAMEF12O95522 483 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 LDHAP00338 332 aaKnown RBP16.97■□□□□ 0.31
CLK3-211ENST00000563297 IDEP14735 1019 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 GARTP22102 1010 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 CDC25CP30307 473 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 TFAMQ00059 246 aaKnown RBP16.97■□□□□ 0.31
CLK3-211ENST00000563297 ARHGAP29Q52LW3 1261 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 WDR44Q5JSH3 913 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 C1orf228Q6PIY5 440 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 TXNDC11Q6PKC3 985 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 BRSK2Q8IWQ3 736 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 DCP1BQ8IZD4 617 aaKnown RBP16.97■□□□□ 0.31
CLK3-211ENST00000563297 C1orf127Q8N9H9 656 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 TTC8Q8TAM2 541 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 MSANTD3Q96H12 275 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 INTS4Q96HW7 963 aaKnown RBP16.97■□□□□ 0.31
CLK3-211ENST00000563297 ZFYVE19Q96K21 471 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 SLC46A2Q9BY10 475 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 FGFBP2Q9BYJ0 223 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 PANK4Q9NVE7 773 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 TMLHEQ9NVH6 421 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 ABI2Q9NYB9 513 aaPredicted RBP16.97■□□□□ 0.31
CLK3-211ENST00000563297 GTSE1Q9NYZ3 720 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 NCDNQ9UBB6 729 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 AGAP1Q9UPQ3 857 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 MTMR6Q9Y217 621 aa16.97■□□□□ 0.31
CLK3-211ENST00000563297 ZNF638Q14966 1978 aaKnown RBP16.97■□□□□ 0.31
CLK3-211ENST00000563297 MYBPHLA2RUH7 354 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 GOLGA8IPA6NC78 632 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 GOLGA8JA6NMD2 632 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 SPECC1L-ADORA2AF8WAN1 911 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 TULP1O00294 542 aaPredicted RBP16.96■□□□□ 0.31
CLK3-211ENST00000563297 F11P03951 625 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 HMGA1P17096 107 aaKnown RBP16.96■□□□□ 0.31
CLK3-211ENST00000563297 POLR2BP30876 1174 aaKnown RBP16.96■□□□□ 0.31
CLK3-211ENST00000563297 PNPLA4P41247 253 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 STAT6P42226 847 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 CXCL12P48061 93 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 CCR3P51677 355 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 NRLP54845 237 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 TAF12Q16514 161 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 TMEM150AQ86TG1 271 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 RALGPS2Q86X27 583 aaPredicted RBP16.96■□□□□ 0.31
CLK3-211ENST00000563297 SYCP3Q8IZU3 236 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 PDCL2Q8N4E4 241 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 CXorf38Q8TB03 319 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 BPIFB1Q8TDL5 484 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 CACTINQ8WUQ7 758 aaKnown RBP16.96■□□□□ 0.31
CLK3-211ENST00000563297 ZNF560Q96MR9 790 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 CBWD1Q9BRT8 395 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 RBM12Q9NTZ6 932 aaKnown RBP16.96■□□□□ 0.31
CLK3-211ENST00000563297 SMG5Q9UPR3 1016 aaKnown RBP16.96■□□□□ 0.31
CLK3-211ENST00000563297 PCDHB5Q9Y5E4 795 aa16.96■□□□□ 0.31
CLK3-211ENST00000563297 KIF26AQ9ULI4 1882 aaPredicted RBP16.96■□□□□ 0.31
CLK3-211ENST00000563297 EXTL3O43909 919 aa16.95■□□□□ 0.3
CLK3-211ENST00000563297 PRPF6O94906 941 aaKnown RBP16.95■□□□□ 0.3
CLK3-211ENST00000563297 ITGB3P05106 788 aa16.95■□□□□ 0.3
CLK3-211ENST00000563297 CTHP32929 405 aa16.95■□□□□ 0.3
CLK3-211ENST00000563297 SATB1Q01826 763 aa16.95■□□□□ 0.3
CLK3-211ENST00000563297 TNK2Q07912 1038 aa16.95■□□□□ 0.3
CLK3-211ENST00000563297 ALCAMQ13740 583 aa16.95■□□□□ 0.3
CLK3-211ENST00000563297 PUM1Q14671 1186 aaKnown RBP eCLIP16.95■□□□□ 0.3
CLK3-211ENST00000563297 PPP2R5DQ14738 602 aa16.95■□□□□ 0.3
CLK3-211ENST00000563297 SPEM1Q8N4L4 309 aa16.95■□□□□ 0.3
CLK3-211ENST00000563297 CSGALNACT2Q8N6G5 542 aa16.95■□□□□ 0.3
CLK3-211ENST00000563297 FAM84AQ96KN4 292 aa16.95■□□□□ 0.3
CLK3-211ENST00000563297 PI4K2AQ9BTU6 479 aa16.95■□□□□ 0.3
CLK3-211ENST00000563297 SMG9Q9H0W8 520 aaKnown RBP16.95■□□□□ 0.3
CLK3-211ENST00000563297 ZSCAN16Q9H4T2 348 aaPredicted RBP16.95■□□□□ 0.3
CLK3-211ENST00000563297 PCIF1Q9H4Z3 704 aa16.95■□□□□ 0.3
CLK3-211ENST00000563297 DLL3Q9NYJ7 618 aa16.95■□□□□ 0.3
CLK3-211ENST00000563297 RBAKQ9NYW8 714 aaPredicted RBP16.95■□□□□ 0.3
CLK3-211ENST00000563297 L1RE1Q9UN81 338 aa16.95■□□□□ 0.3
CLK3-211ENST00000563297 DNAH14Q0VDD8 3507 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 ATG2BQ96BY7 2078 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 HUS1O60921 280 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 PRPF40AO75400 957 aaKnown RBP16.94■□□□□ 0.3
CLK3-211ENST00000563297 GPR15P49685 360 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 NLRP12P59046 1061 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 PLCB2Q00722 1185 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 TSPY1Q01534 308 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 LRRC32Q14392 662 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 CMTM8Q8IZV2 173 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 GPR161Q8N6U8 529 aaKnown RBP16.94■□□□□ 0.3
CLK3-211ENST00000563297 CELF5Q8N6W0 485 aaKnown RBP16.94■□□□□ 0.3
CLK3-211ENST00000563297 LRRC52Q8N7C0 313 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms