RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PDGFRBP09619 1106 aa22.58■■□□□ 1.21
CLN3-209ENST00000561689 MMP8P22894 467 aa22.58■■□□□ 1.21
CLN3-209ENST00000561689 TLE2Q04725 743 aa22.58■■□□□ 1.21
CLN3-209ENST00000561689 NT5DC3Q86UY8 548 aa22.58■■□□□ 1.21
CLN3-209ENST00000561689 SCLYQ96I15 445 aa22.58■■□□□ 1.21
CLN3-209ENST00000561689 ZNF518BQ9C0D4 1074 aa22.58■■□□□ 1.21
CLN3-209ENST00000561689 HIPK3Q9H422 1215 aa22.58■■□□□ 1.21
CLN3-209ENST00000561689 DPEP3Q9H4B8 488 aa22.58■■□□□ 1.21
CLN3-209ENST00000561689 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.58■■□□□ 1.21
CLN3-209ENST00000561689 O00370 1275 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 CYB561D2O14569 222 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 MTA2O94776 668 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 PRLRP16471 622 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 LMO2P25791 158 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 CDH5P33151 784 aaPredicted RBP22.58■■□□□ 1.2
CLN3-209ENST00000561689 GNL1P36915 607 aaPredicted RBP22.58■■□□□ 1.2
CLN3-209ENST00000561689 CCL23P55773 120 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 C1QBPQ07021 282 aaKnown RBP22.58■■□□□ 1.2
CLN3-209ENST00000561689 FAAP100Q0VG06 881 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 MESDQ14696 234 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 RPS6KA1Q15418 735 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 CNGA2Q16280 664 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 LIN9Q5TKA1 542 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 C3orf58Q8NDZ4 430 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 ARMC5Q96C12 935 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 VCPIP1Q96JH7 1222 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 LPIN3Q9BQK8 851 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 FTHL17Q9BXU8 183 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 LHX5Q9H2C1 402 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 ABCB6Q9NP58 842 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 AVENQ9NQS1 362 aaPredicted RBP22.58■■□□□ 1.2
CLN3-209ENST00000561689 CYTH4Q9UIA0 394 aa22.58■■□□□ 1.2
CLN3-209ENST00000561689 DCDC2CA8MYV0 355 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 M0QYV0 167 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 TCP1P17987 556 aaKnown RBP22.57■■□□□ 1.2
CLN3-209ENST00000561689 FAM189BP81408 668 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 UPP1Q16831 310 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 PLEKHG4Q58EX7 1191 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 PPP1R2P3Q6NXS1 205 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 LIMS2Q7Z4I7 341 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 UNC93AQ86WB7 457 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 ADGRF2Q8IZF7 708 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 PDCL2Q8N4E4 241 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 UBA3Q8TBC4 463 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 PPP1R12CQ9BZL4 782 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 SNX25Q9H3E2 840 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 KIAA1257Q9ULG3 409 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 STXBP5LQ9Y2K9 1186 aa22.57■■□□□ 1.2
CLN3-209ENST00000561689 KIF4AO95239 1232 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 EOMESO95936 686 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 GRIK3Q13003 919 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 ERICH1Q86X53 443 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 CEP112Q8N8E3 955 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 TRIM7Q9C029 511 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 FAM49BQ9NUQ9 324 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 AMFRQ9UKV5 643 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 ALG6Q9Y672 507 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 MKI67P46013 3256 aaKnown RBP22.56■■□□□ 1.2
CLN3-209ENST00000561689 COL6A1P12109 1028 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 RPL9P32969 192 aaKnown RBP22.56■■□□□ 1.2
CLN3-209ENST00000561689 TCTN1Q2MV58 587 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 CLLU1OSQ5K130 101 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 GLB1LQ6UWU2 654 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 CREG2Q8IUH2 290 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 TOP6BLQ8N6T0 577 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 CALR3Q96L12 384 aaKnown RBP22.56■■□□□ 1.2
CLN3-209ENST00000561689 ANAPC7Q9UJX3 599 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 TSPAN16Q9UKR8 245 aa22.56■■□□□ 1.2
CLN3-209ENST00000561689 ENPP3O14638 875 aa22.55■■□□□ 1.2
CLN3-209ENST00000561689 TADA3O75528 432 aa22.55■■□□□ 1.2
CLN3-209ENST00000561689 GJB6O95452 261 aa22.55■■□□□ 1.2
CLN3-209ENST00000561689 CYP2C18P33260 490 aa22.55■■□□□ 1.2
CLN3-209ENST00000561689 MAMLD1Q13495 774 aa22.55■■□□□ 1.2
CLN3-209ENST00000561689 PAN2Q504Q3 1202 aaKnown RBP22.55■■□□□ 1.2
CLN3-209ENST00000561689 PPP1R26Q5T8A7 1209 aaPredicted RBP22.55■■□□□ 1.2
CLN3-209ENST00000561689 CYP4A22Q5TCH4 519 aa22.55■■□□□ 1.2
CLN3-209ENST00000561689 WSCD1Q658N2 575 aa22.55■■□□□ 1.2
CLN3-209ENST00000561689 C11orf63Q6NUN7 778 aa22.55■■□□□ 1.2
CLN3-209ENST00000561689 SEPT8Q92599 483 aa22.55■■□□□ 1.2
CLN3-209ENST00000561689 SENP8Q96LD8 212 aa22.55■■□□□ 1.2
CLN3-209ENST00000561689 WNT8AQ9H1J5 351 aa22.55■■□□□ 1.2
CLN3-209ENST00000561689 ATP11BQ9Y2G3 1177 aa22.55■■□□□ 1.2
CLN3-209ENST00000561689 PDE2AO00408 941 aaPredicted RBP22.54■■□□□ 1.2
CLN3-209ENST00000561689 KCNK3O14649 394 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 GJA8P48165 433 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 TUSC3Q13454 348 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 PTPN20Q4JDL3 420 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 LCLAT1Q6UWP7 414 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 OSTM1Q86WC4 334 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 MS4A14Q96JA4 679 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 TOX2Q96NM4 488 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 SMARCAL1Q9NZC9 954 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 EHD2Q9NZN4 543 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 TJP2Q9UDY2 1190 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 B3GAT3O94766 335 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 CALB1P05937 261 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 COMTP21964 271 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 GPD2P43304 727 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 PKN2Q16513 984 aaKnown RBP22.54■■□□□ 1.2
CLN3-209ENST00000561689 GOLGA7BQ2TAP0 167 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms