RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CRYGNQ8WXF5 182 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 FERMT1Q9BQL6 677 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 PAAF1Q9BRP4 392 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 LACRTQ9GZZ8 138 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 SUDS3Q9H7L9 328 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ALG13Q9NP73 1137 aaKnown RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 TTC7AQ9ULT0 858 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ADGRG1Q9Y653 693 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 COL2A1P02458 1487 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 MYH6P13533 1939 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 FAM237AA0A1B0GTK4 181 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ARHGEF37A1IGU5 675 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ARL5CA6NH57 179 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 F8VZ95 297 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 PER2O15055 1255 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 KIAA0391O15091 583 aaKnown RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 BUB1BO60566 1050 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 SLU7O95391 586 aaKnown RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 HOXC6P09630 235 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 IQCF3P0C7M6 154 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 VAV2P52735 878 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 PRMT2P55345 433 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 PSMD6Q15008 389 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ELF2Q15723 593 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ELMOD1Q8N336 334 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 CCDC89Q8N998 374 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 WNT8BQ93098 351 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 MAGOHBQ96A72 148 aaKnown RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 KRT12Q99456 494 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 MRPL45Q9BRJ2 306 aaKnown RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 TMEM134Q9H6X4 195 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 IFT122Q9HBG6 1241 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 MRPL47Q9HD33 250 aaKnown RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 PPANQ9NQ55 473 aaKnown RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 TAS2R14Q9NYV8 317 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ARHGAP20Q9P2F6 1191 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 RASAL2Q9UJF2 1139 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 A0A1W2PQC6 194 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 F8VP50 259 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ZNF185O15231 689 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 POLR3GO15318 223 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 LRG1P02750 347 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 NUBP1P53384 320 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 C2orf54Q08AI8 447 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 KCNMA1Q12791 1236 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 EFEMP1Q12805 493 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 NAA30Q147X3 362 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 SEPT7Q16181 437 aaKnown RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ERCC6LQ2NKX8 1250 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ACCSLQ4AC99 568 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 CFAP58Q5T655 872 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 SLC39A4Q6P5W5 647 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 C1orf228Q6PIY5 440 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 TSHZ1Q6ZSZ6 1077 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 AFAP1L1Q8TED9 768 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 LRRN4Q8WUT4 740 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ZNF606Q8WXB4 792 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 PANX2Q96RD6 677 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 WDR24Q96S15 920 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ZCCHC17Q9NP64 241 aaKnown RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 DDIT4Q9NX09 232 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 WBP1LQ9NX94 342 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 PLAGL2Q9UPG8 496 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 CDY1Q9Y6F8 540 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 CASP8AP2Q9UKL3 1982 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 GOLGA6CA6NDK9 693 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 GOLGA6BA6NDN3 693 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 GRXCR1A8MXD5 290 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 F8W810 466 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 SGK1O00141 431 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 LGR5O75473 907 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 ERLIN1O75477 346 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 FGGP02679 453 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 GOLGA6DP0CG33 693 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 ARL4AP40617 200 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 SULT1E1P49888 294 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 AP3M2P53677 418 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 CDH6P55285 790 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 ADIGQ0VDE8 80 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 GPS2Q13227 327 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 LPIN1Q14693 890 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 MIIPQ5JXC2 388 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 ZNF280DQ6N043 979 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 TMCO3Q6UWJ1 677 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.75□□□□□ -1.49
VPS13C-209ENST00000560637 SYCE1Q8N0S2 351 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 TTC8Q8TAM2 541 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 SLC35G2Q8TBE7 412 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 USP33Q8TEY7 942 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 RSAD2Q8WXG1 361 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 FBXO32Q969P5 355 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 TMEM176AQ96HP8 235 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 MS4A14Q96JA4 679 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 ERGIC2Q96RQ1 377 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 RHOBTB2Q9BYZ6 727 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 ASB7Q9H672 318 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 AAASQ9NRG9 546 aa5.75□□□□□ -1.49
VPS13C-209ENST00000560637 GOLGA6AQ9NYA3 693 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms