RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 PLEKHO2Q8TD55 490 aa13.46□□□□□ -0.25
SMAD3-208ENST00000558827 ZNF516Q92618 1163 aa13.46□□□□□ -0.25
SMAD3-208ENST00000558827 HPDLQ96IR7 371 aa13.46□□□□□ -0.25
SMAD3-208ENST00000558827 FNBP1Q96RU3 617 aa13.46□□□□□ -0.25
SMAD3-208ENST00000558827 LRRC3Q9BY71 257 aa13.46□□□□□ -0.25
SMAD3-208ENST00000558827 OXCT2Q9BYC2 517 aaPredicted RBP13.46□□□□□ -0.25
SMAD3-208ENST00000558827 ATXN3LQ9H3M9 355 aa13.46□□□□□ -0.25
SMAD3-208ENST00000558827 GDE1Q9NZC3 331 aa13.46□□□□□ -0.25
SMAD3-208ENST00000558827 GTF3C4Q9UKN8 822 aa13.46□□□□□ -0.25
SMAD3-208ENST00000558827 ITGA11Q9UKX5 1188 aa13.46□□□□□ -0.25
SMAD3-208ENST00000558827 HPSEQ9Y251 543 aa13.46□□□□□ -0.25
SMAD3-208ENST00000558827 ARIH1Q9Y4X5 557 aaPredicted RBP13.46□□□□□ -0.25
SMAD3-208ENST00000558827 PIEZO1Q92508 2521 aa13.46□□□□□ -0.26
SMAD3-208ENST00000558827 NCANO14594 1321 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 GALR2O43603 387 aaPredicted RBP13.45□□□□□ -0.26
SMAD3-208ENST00000558827 PRPF40AO75400 957 aaKnown RBP13.45□□□□□ -0.26
SMAD3-208ENST00000558827 HAPLN1P10915 354 aaPredicted RBP13.45□□□□□ -0.26
SMAD3-208ENST00000558827 ATF6P18850 670 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 FCARP24071 287 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 CYP2F1P24903 491 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 LMO2P25791 158 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 GABRR2P28476 465 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 PNPLA4P41247 253 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 CLCN5P51795 746 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 PSMC1P62191 440 aaKnown RBP13.45□□□□□ -0.26
SMAD3-208ENST00000558827 TSPY1Q01534 308 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 BECN1Q14457 450 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 TAF12Q16514 161 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 DDR2Q16832 855 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 KNOP1Q1ED39 458 aaKnown RBP13.45□□□□□ -0.26
SMAD3-208ENST00000558827 SOWAHAQ2M3V2 549 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 GAREM2Q75VX8 874 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 TRAPPC11Q7Z392 1133 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 DCP1BQ8IZD4 617 aaKnown RBP13.45□□□□□ -0.26
SMAD3-208ENST00000558827 ADGRF2Q8IZF7 708 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 TTC8Q8TAM2 541 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 RSPRY1Q96DX4 576 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 MMS19Q96T76 1030 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 SMG9Q9H0W8 520 aaKnown RBP13.45□□□□□ -0.26
SMAD3-208ENST00000558827 ZFP14Q9HCL3 533 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 AVENQ9NQS1 362 aaPredicted RBP13.45□□□□□ -0.26
SMAD3-208ENST00000558827 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.45□□□□□ -0.266e-9■■■■■ 121.6
SMAD3-208ENST00000558827 SLC2A4RGQ9NR83 387 aa13.45□□□□□ -0.26
SMAD3-208ENST00000558827 MAGED2Q9UNF1 606 aaPredicted RBP13.45□□□□□ -0.26
SMAD3-208ENST00000558827 MTF2Q9Y483 593 aaPredicted RBP13.45□□□□□ -0.26
SMAD3-208ENST00000558827 ZFHX2Q9C0A1 2572 aaPredicted RBP13.45□□□□□ -0.26
SMAD3-208ENST00000558827 MYBPHLA2RUH7 354 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 KIAA0391O15091 583 aaKnown RBP13.44□□□□□ -0.26
SMAD3-208ENST00000558827 ECI2O75521 394 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 RPN1P04843 607 aaKnown RBP13.44□□□□□ -0.26
SMAD3-208ENST00000558827 PAX3P23760 479 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 GDI1P31150 447 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 MRE11P49959 708 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 MYL7Q01449 175 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 UBXN2BQ14CS0 331 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 PSMD6Q15008 389 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 SURF1Q15526 300 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 MLF2Q15773 248 aaPredicted RBP13.44□□□□□ -0.26
SMAD3-208ENST00000558827 GPR158Q5T848 1215 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 VITQ6UXI7 678 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 SCN4BQ8IWT1 228 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 LRRC52Q8N7C0 313 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 DTWD2Q8NBA8 298 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 SMARCD2Q92925 531 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 ASB16Q96NS5 453 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 CGRRF1Q99675 332 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 GZF1Q9H116 711 aaPredicted RBP13.44□□□□□ -0.26
SMAD3-208ENST00000558827 KCNH6Q9H252 994 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 BRD9Q9H8M2 597 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 KIAA1586Q9HCI6 787 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 HEBP1Q9NRV9 189 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 MAFFQ9ULX9 164 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 PCDHB5Q9Y5E4 795 aa13.44□□□□□ -0.26
SMAD3-208ENST00000558827 UBE4BO95155 1302 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 F5P12259 2224 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 HEPACAM2A8MVW5 462 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 PHACTR2O75167 634 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 ZNF202O95125 648 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 TUFMP49411 452 aaKnown RBP13.43□□□□□ -0.26
SMAD3-208ENST00000558827 EPHA5P54756 1037 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 MYL6P60660 151 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 MYO1EQ12965 1108 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 VEPH1Q14D04 833 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 BMT2Q1RMZ1 405 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 INTS6LQ5JSJ4 861 aaKnown RBP13.43□□□□□ -0.26
SMAD3-208ENST00000558827 CEP135Q66GS9 1140 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 KRBA2Q6ZNG9 492 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 TPRG1Q6ZUI0 275 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 WDR49Q8IV35 697 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 TTC16Q8NEE8 873 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 ERCC4Q92889 916 aaPredicted RBP13.43□□□□□ -0.26
SMAD3-208ENST00000558827 PSMG2Q969U7 264 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 ELSPBP1Q96BH3 223 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 MRPL45Q9BRJ2 306 aaKnown RBP13.43□□□□□ -0.26
SMAD3-208ENST00000558827 SCAND2PQ9GZW5 306 aaPredicted RBP13.43□□□□□ -0.26
SMAD3-208ENST00000558827 GDAP2Q9NXN4 497 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 NXF1Q9UBU9 619 aaKnown RBP13.43□□□□□ -0.26
SMAD3-208ENST00000558827 SIT1Q9Y3P8 196 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 ATP6V1DQ9Y5K8 247 aa13.43□□□□□ -0.26
SMAD3-208ENST00000558827 CACNA1IQ9P0X4 2223 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms