RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 C8orf33Q9H7E9 229 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 PCDHB13Q9Y5F0 798 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 CHRNB1P11230 501 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 ATF6P18850 670 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 CDC25CP30307 473 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 PNPLA4P41247 253 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 STAT6P42226 847 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 SOX9P48436 509 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 CCR3P51677 355 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 NRLP54845 237 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 CYP4F8P98187 520 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 TFAMQ00059 246 aaKnown RBP11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 ARHGAP29Q52LW3 1261 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 MAMSTRQ6ZN01 415 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 LRRTM3Q86VH5 581 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 BRSK2Q8IWQ3 736 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 SYCP3Q8IZU3 236 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 GIPC2Q8TF65 315 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 CACTINQ8WUQ7 758 aaKnown RBP11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 SAAL1Q96ER3 474 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 PANK2Q9BZ23 570 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 OLFML3Q9NRN5 406 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 OBP2AQ9NY56 170 aa11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 ABI2Q9NYB9 513 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 SMG5Q9UPR3 1016 aaKnown RBP11.94□□□□□ -0.5
CCDC88C-213ENST00000557455 SPECC1L-ADORA2AF8WAN1 911 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 ITGB3P05106 788 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 HAPLN1P10915 354 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 GARTP22102 1010 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 WEE1P30291 646 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 POLR2BP30876 1174 aaKnown RBP11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 CXCL12P48061 93 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 TSPY1Q01534 308 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 ALCAMQ13740 583 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 LRRC32Q14392 662 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 PUM1Q14671 1186 aaKnown RBP eCLIP11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 SLC39A14Q15043 492 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 RALGPS2Q86X27 583 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 GPR161Q8N6U8 529 aaKnown RBP11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 ZSWIM2Q8NEG5 633 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 TTC8Q8TAM2 541 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 BPIFB1Q8TDL5 484 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 NOC3LQ8WTT2 800 aaKnown RBP11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 INTS4Q96HW7 963 aaKnown RBP11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 ZFYVE19Q96K21 471 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 LRRC3BQ96PB8 259 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 ZSCAN16Q9H4T2 348 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 IL21Q9HBE4 155 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 PANK4Q9NVE7 773 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 RBAKQ9NYW8 714 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 GTSE1Q9NYZ3 720 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 ZMYM5Q9UJ78 669 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 AGAP1Q9UPQ3 857 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 PCDHB5Q9Y5E4 795 aa11.93□□□□□ -0.5
CCDC88C-213ENST00000557455 FRMD3A2A2Y4 597 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 MYBPHLA2RUH7 354 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 GOLGA8IPA6NC78 632 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 GOLGA8JA6NMD2 632 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 HUS1O60921 280 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 PRAMEF12O95522 483 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 KRT19P08727 400 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 TDGF1P13385 188 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 CTHP32929 405 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 CASP5P51878 434 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 WNT7BP56706 349 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 PLCB2Q00722 1185 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 SATB1Q01826 763 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 NFE2Q16621 373 aaPredicted RBP11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 DGKKQ5KSL6 1271 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 DGLUCYQ7Z3D6 616 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 PDCL2Q8N4E4 241 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 SPEM1Q8N4L4 309 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 CSGALNACT2Q8N6G5 542 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 CELF5Q8N6W0 485 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 PDILTQ8N807 584 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 C1orf127Q8N9H9 656 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 USP28Q96RU2 1077 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 PI4K2AQ9BTU6 479 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 SLC46A2Q9BY10 475 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 PCIF1Q9H4Z3 704 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 TMEM206Q9H813 350 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 RBM12Q9NTZ6 932 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 FOXD4L1Q9NU39 408 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 THG1LQ9NWX6 298 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 DDX43Q9NXZ2 648 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 ITGA11Q9UKX5 1188 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 RAB23Q9ULC3 237 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 MTMR6Q9Y217 621 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 MORC2Q9Y6X9 1032 aaPredicted RBP11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 RALGAPA1Q6GYQ0 2036 aa11.92□□□□□ -0.5
CCDC88C-213ENST00000557455 CACNA1AO00555 2505 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 A0A087X0B3 334 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 STX6O43752 255 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 EXTL3O43909 919 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 PRPF40AO75400 957 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 PRPF6O94906 941 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 TMEM191BP0C7N4 346 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 CSH1P0DML2 217 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 CSH2P0DML3 217 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 AVPR1AP37288 418 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms