RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 RNF135Q8IUD6 432 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 MLKLQ8NB16 471 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 ATAD1Q8NBU5 361 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 SPPL2BQ8TCT7 592 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 ZNF512Q96ME7 567 aaPredicted RBP11.45□□□□□ -0.58
LINC00239-201ENST00000556973 DUSP9Q99956 384 aaKnown RBP11.45□□□□□ -0.58
LINC00239-201ENST00000556973 SNX25Q9H3E2 840 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 METTL14Q9HCE5 456 aaKnown RBP11.45□□□□□ -0.58
LINC00239-201ENST00000556973 TMEM8AQ9HCN3 771 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 DNMT3BQ9UBC3 853 aaKnown RBP11.45□□□□□ -0.58
LINC00239-201ENST00000556973 NXF1Q9UBU9 619 aaKnown RBP11.45□□□□□ -0.58
LINC00239-201ENST00000556973 CDH9Q9ULB4 789 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 SLC27A5Q9Y2P5 690 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 INSL5Q9Y5Q6 135 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 C5orf42Q9H799 3197 aa11.45□□□□□ -0.58
LINC00239-201ENST00000556973 C2CD4DB7Z1M9 353 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 PI4K2BG5E9Z4 385 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 FGFR1OPO95684 399 aaKnown RBP11.44□□□□□ -0.58
LINC00239-201ENST00000556973 GNA14O95837 355 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 TRIM49P0CI25 452 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 TRIM49CP0CI26 452 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 ALADP13716 330 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 FSHRP23945 695 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 LMO2P25791 158 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 GCLMP48507 274 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 EPHB3P54753 998 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 MAPRE1Q15691 268 aaKnown RBP11.44□□□□□ -0.58
LINC00239-201ENST00000556973 NFE2Q16621 373 aaPredicted RBP11.44□□□□□ -0.58
LINC00239-201ENST00000556973 PABPC1LQ4VXU2 614 aaKnown RBP11.44□□□□□ -0.58
LINC00239-201ENST00000556973 INTS6LQ5JSJ4 861 aaKnown RBP11.44□□□□□ -0.58
LINC00239-201ENST00000556973 IQCEQ6IPM2 695 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 FAM171BQ6P995 826 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 TDRD5Q8NAT2 981 aaKnown RBP11.44□□□□□ -0.58
LINC00239-201ENST00000556973 GPT2Q8TD30 523 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 KBTBD7Q8WVZ9 684 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 CRISPLD1Q9H336 500 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 MMRN2Q9H8L6 949 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 AVENQ9NQS1 362 aaPredicted RBP11.44□□□□□ -0.58
LINC00239-201ENST00000556973 ARMCX3Q9UH62 379 aaPredicted RBP11.44□□□□□ -0.58
LINC00239-201ENST00000556973 RWDD2AQ9UIY3 292 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 GTF3C4Q9UKN8 822 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 CTNND2Q9UQB3 1225 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 ASB3Q9Y575 518 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 PCDHB5Q9Y5E4 795 aa11.44□□□□□ -0.58
LINC00239-201ENST00000556973 ZFP37Q9Y6Q3 630 aaPredicted RBP11.44□□□□□ -0.58
LINC00239-201ENST00000556973 NOTCH4Q99466 2003 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 A8MXQ7 604 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 ZNF197O14709 1029 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 MICAL2O94851 1124 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 CLSTN1O94985 981 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 ASS1P00966 412 aaKnown RBP11.43□□□□□ -0.58
LINC00239-201ENST00000556973 HLA-DRAP01903 254 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 RHOP08100 348 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 PDGFRBP09619 1106 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 HAPLN1P10915 354 aaPredicted RBP11.43□□□□□ -0.58
LINC00239-201ENST00000556973 SP100P23497 879 aaPredicted RBP11.43□□□□□ -0.58
LINC00239-201ENST00000556973 ACAT1P24752 427 aaKnown RBP11.43□□□□□ -0.58
LINC00239-201ENST00000556973 GBP2P32456 591 aaPredicted RBP11.43□□□□□ -0.58
LINC00239-201ENST00000556973 PIK3CAP42336 1068 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 STX17P56962 302 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 NTHL1P78549 312 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 MGAT5BQ3V5L5 792 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 CYP4A22Q5TCH4 519 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 TCERG1LQ5VWI1 586 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 OSTM1Q86WC4 334 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 LEMD2Q8NC56 503 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 CCDC150Q8NCX0 1101 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 OR6B3Q8NGW1 331 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 FAXDC2Q96IV6 333 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 PKMYT1Q99640 499 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 MRPL45Q9BRJ2 306 aaKnown RBP11.43□□□□□ -0.58
LINC00239-201ENST00000556973 SRRTQ9BXP5 876 aaKnown RBP11.43□□□□□ -0.58
LINC00239-201ENST00000556973 IMPG2Q9BZV3 1241 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 ABCB6Q9NP58 842 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 TMLHEQ9NVH6 421 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 HCFC1R1Q9NWW0 138 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 CEP72Q9P209 647 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 LIMD1Q9UGP4 676 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 DACH1Q9UI36 760 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 YIPF1Q9Y548 306 aa11.43□□□□□ -0.58
LINC00239-201ENST00000556973 MYBPHLA2RUH7 354 aa11.42□□□□□ -0.58
LINC00239-201ENST00000556973 ATP2C2O75185 946 aa11.42□□□□□ -0.58
LINC00239-201ENST00000556973 MBD3O95983 291 aa11.42□□□□□ -0.58
LINC00239-201ENST00000556973 LAMP2P13473 410 aa11.42□□□□□ -0.58
LINC00239-201ENST00000556973 CDH8P55286 799 aa11.42□□□□□ -0.58
LINC00239-201ENST00000556973 NLRP12P59046 1061 aa11.42□□□□□ -0.58
LINC00239-201ENST00000556973 CFAP221Q4G0U5 840 aa11.42□□□□□ -0.58
LINC00239-201ENST00000556973 CCDC40Q4G0X9 1142 aa11.42□□□□□ -0.58
LINC00239-201ENST00000556973 DCAF17Q5H9S7 520 aaPredicted RBP11.42□□□□□ -0.58
LINC00239-201ENST00000556973 CT47A1Q5JQC4 288 aaPredicted RBP11.42□□□□□ -0.58
LINC00239-201ENST00000556973 C4orf50Q6ZRC1 276 aa11.42□□□□□ -0.58
LINC00239-201ENST00000556973 DNAJB7Q7Z6W7 309 aaPredicted RBP11.42□□□□□ -0.58
LINC00239-201ENST00000556973 ITIH5Q86UX2 942 aa11.42□□□□□ -0.58
LINC00239-201ENST00000556973 SPATA2LQ8IUW3 424 aaPredicted RBP11.42□□□□□ -0.58
LINC00239-201ENST00000556973 FBXL13Q8NEE6 735 aa11.42□□□□□ -0.58
LINC00239-201ENST00000556973 ITFG1Q8TB96 612 aa11.42□□□□□ -0.58
LINC00239-201ENST00000556973 TAS1R2Q8TE23 839 aa11.42□□□□□ -0.58
LINC00239-201ENST00000556973 KHSRPQ92945 711 aaKnown RBP eCLIP11.42□□□□□ -0.58
LINC00239-201ENST00000556973 NXPE3Q969Y0 559 aa11.42□□□□□ -0.58
LINC00239-201ENST00000556973 FUBP3Q96I24 572 aaKnown RBP eCLIP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms