RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	ZNF394	Q53GI3	561 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	PLPP4	Q5VZY2	271 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	PRSS55	Q6UWB4	352 aa	Predicted RBP	13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	CNGA4	Q8IV77	575 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	DCP1B	Q8IZD4	617 aa	Known RBP	13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	RBBP8NL	Q8NC74	664 aa	Predicted RBP	13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	GDPD5	Q8WTR4	605 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	CPLX3	Q8WVH0	158 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	PPP2R3C	Q969Q6	453 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	TMEM176A	Q96HP8	235 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	SYT15	Q9BQS2	421 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	NAA15	Q9BXJ9	866 aa	Known RBP	13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	ZNHIT6	Q9NWK9	470 aa	Known RBP	13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	MTRR	Q9UBK8	725 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	CAPN11	Q9UMQ6	739 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	BACE2	Q9Y5Z0	518 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	RANBP2	P49792	3224 aa	Known RBP	13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	GYPC	P04921	128 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	ADH1A	P07327	375 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	PAEP	P09466	180 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	CD19	P15391	556 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	ACO1	P21399	889 aa	Known RBP	13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	ACAT1	P24752	427 aa	Known RBP	13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	LMO2	P25791	158 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	CASP14	P31944	242 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	NDUFV1	P49821	464 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	PDE6C	P51160	858 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	ARPP19	P56211	112 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	PSMC1	P62191	440 aa	Known RBP	13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	ZBED6	P86452	979 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	PTK2	Q05397	1052 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	MRPL58	Q14197	206 aa	Known RBP	13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	SFMBT2	Q5VUG0	894 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	KIAA0319	Q5VV43	1072 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	DPY19L2P1	Q6NXN4	242 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	ACOT1	Q86TX2	421 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	B3GALNT2	Q8NCR0	500 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	LNX1	Q8TBB1	728 aa	Predicted RBP	13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	AUTS2	Q8WXX7	1259 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	HEXIM2	Q96MH2	286 aa	Known RBP	13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	TTYH3	Q9C0H2	523 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	IMPACT	Q9P2X3	320 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	HMGXB4	Q9UGU5	601 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	AJAP1	Q9UKB5	411 aa	Predicted RBP	13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	KIAA1257	Q9ULG3	409 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	CDY1	Q9Y6F8	540 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	NLRC5	Q86WI3	1866 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	ATP8B3	O60423	1300 aa		13.33	□□□□□ -0.28
ABCD4-223	ENST00000555904	LRRC53	A6NM62	1247 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	AKR1B15	C9JRZ8	316 aa	Predicted RBP	13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	FOXN3	O00409	490 aa	Predicted RBP	13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	MED7	O43513	233 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	GFPT2	O94808	682 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	FER	P16591	822 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	PTPN1	P18031	435 aa	Known RBP	13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	KRT9	P35527	623 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	RAD23B	P54727	409 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	JAM2	P57087	298 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	ERVFC1	P60507	584 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	ARID5A	Q03989	594 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	SMARCB1	Q12824	385 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	ORC1	Q13415	861 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	ASIC2	Q16515	512 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	NFE2	Q16621	373 aa	Predicted RBP	13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	SGO2	Q562F6	1265 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	INTS6L	Q5JSJ4	861 aa	Known RBP	13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	SLC8B1	Q6J4K2	584 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	ELMSAN1	Q6PJG2	1045 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	C4orf50	Q6ZRC1	276 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	OSTM1	Q86WC4	334 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	FAM71A	Q8IYT1	594 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	UBR7	Q8N806	425 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	MRPL43	Q8N983	215 aa	Known RBP	13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	SPC24	Q8NBT2	197 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	OR10T2	Q8NGX3	314 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	FNIP2	Q9P278	1114 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	CNTN6	Q9UQ52	1028 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	IRAK3	Q9Y616	596 aa		13.32	□□□□□ -0.28
ABCD4-223	ENST00000555904	SCN1A	P35498	2009 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	C2orf71	A6NGG8	1288 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	CYP26A1	O43174	497 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	MFAP3L	O75121	409 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	RPL17	P18621	184 aa	Known RBP	13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	DNAJB1	P25685	340 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	KLRC2	P26717	231 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	GNA15	P30679	374 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	OR1D2	P34982	312 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	FXR1	P51114	621 aa	Known RBP eCLIP	13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	ZNF132	P52740	706 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	SLC8A3	P57103	927 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	CYP27A1	Q02318	531 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	SLC39A12	Q504Y0	691 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	MDH1B	Q5I0G3	518 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	SPATA2L	Q8IUW3	424 aa	Predicted RBP	13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	GLYCTK	Q8IVS8	523 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	CRYBG2	Q8N1P7	616 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	SLC4A11	Q8NBS3	891 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	OR8K1	Q8NGG5	319 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	MYCBPAP	Q8TBZ2	947 aa		13.31	□□□□□ -0.28
ABCD4-223	ENST00000555904	C2orf15	Q8WU43	125 aa	Known RBP	13.31	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms