RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 UBA1P22314 1058 aaKnown RBP14.23□□□□□ -0.13
SHMT2-222ENST00000555774 POLR2BP30876 1174 aaKnown RBP14.23□□□□□ -0.13
SHMT2-222ENST00000555774 CDKN2BP42772 138 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 ALDH5A1P51649 535 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-222ENST00000555774 GPS1Q13098 491 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 ZNF268Q14587 947 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-222ENST00000555774 SH3D19Q5HYK7 790 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 TMEM63BQ5T3F8 832 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 KAZNQ674X7 775 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 CYP4F22Q6NT55 531 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 ERICH1Q86X53 443 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 TTC13Q8NBP0 860 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 PCYT2Q99447 389 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 NCAPGQ9BPX3 1015 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 KLHL11Q9NVR0 708 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 DOCK5Q9H7D0 1870 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 SMAPO00193 183 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 MSCO60682 206 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 ASMTLO95671 621 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 CST3P01034 146 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-222ENST00000555774 EZRP15311 586 aaKnown RBP14.23□□□□□ -0.13
SHMT2-222ENST00000555774 EDNRBP24530 442 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 BRD2P25440 801 aaKnown RBP14.23□□□□□ -0.13
SHMT2-222ENST00000555774 GCAP28676 217 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 SSTR3P32745 418 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-222ENST00000555774 STAT5BP51692 787 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 TRPC3Q13507 836 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 SPARCL1Q14515 664 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 ATP13A4Q4VNC1 1196 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 GPAT2Q6NUI2 795 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 SEPT14Q6ZU15 432 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 ZBTB8OSQ8IWT0 167 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 SLC35B2Q8TB61 432 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 FNIP1Q8TF40 1166 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 FAXDC2Q96IV6 333 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 C2orf40Q9H1Z8 148 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 NOD2Q9HC29 1040 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 SSU72Q9NP77 194 aaKnown RBP14.23□□□□□ -0.13
SHMT2-222ENST00000555774 AGAP1Q9UPQ3 857 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 STARD13Q9Y3M8 1113 aa14.23□□□□□ -0.13
SHMT2-222ENST00000555774 LCTP09848 1927 aa14.22□□□□□ -0.13
SHMT2-222ENST00000555774 MYH9P35579 1960 aaKnown RBP14.22□□□□□ -0.13
SHMT2-222ENST00000555774 F8VP50 259 aa14.22□□□□□ -0.13
SHMT2-222ENST00000555774 KRT7P08729 469 aa14.22□□□□□ -0.13
SHMT2-222ENST00000555774 HARSP12081 509 aaKnown RBP14.22□□□□□ -0.13
SHMT2-222ENST00000555774 TCF4P15884 667 aa14.22□□□□□ -0.13
SHMT2-222ENST00000555774 MYL6P60660 151 aa14.22□□□□□ -0.13
SHMT2-222ENST00000555774 OGDHQ02218 1023 aa14.22□□□□□ -0.13
SHMT2-222ENST00000555774 DENND1AQ8TEH3 1009 aa14.22□□□□□ -0.13
SHMT2-222ENST00000555774 ACO2Q99798 780 aaKnown RBP14.22□□□□□ -0.13
SHMT2-222ENST00000555774 MTMR12Q9C0I1 747 aa14.22□□□□□ -0.13
SHMT2-222ENST00000555774 PDGFDQ9GZP0 370 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-222ENST00000555774 LHX5Q9H2C1 402 aa14.22□□□□□ -0.13
SHMT2-222ENST00000555774 MLXIPLQ9NP71 852 aa14.22□□□□□ -0.13
SHMT2-222ENST00000555774 CPSF3Q9UKF6 684 aaKnown RBP14.22□□□□□ -0.13
SHMT2-222ENST00000555774 PPP2R3BQ9Y5P8 575 aa14.22□□□□□ -0.13
SHMT2-222ENST00000555774 LRRD1A4D1F6 860 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 NFKBIEO00221 500 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 MED7O43513 233 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 TGFB3P10600 412 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 ALADP13716 330 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 MAP2K2P36507 400 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 TNFSF9P41273 254 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 MXD4Q14582 209 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-222ENST00000555774 CGB2Q6NT52 195 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 TBC1D1Q86TI0 1168 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-222ENST00000555774 GLIS1Q8NBF1 620 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 SEPT1Q8WYJ6 367 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 PRCCQ92733 491 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-222ENST00000555774 KLRG1Q96E93 195 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 SMC6Q96SB8 1091 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 PITPNM3Q9BZ71 974 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 TRABDQ9H4I3 376 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 AFG3L2Q9Y4W6 797 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 TSHRP16473 764 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 PHBP35232 272 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 WDR4P57081 412 aaKnown RBP14.21□□□□□ -0.13
SHMT2-222ENST00000555774 ZKSCAN8Q15776 578 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-222ENST00000555774 TAZQ16635 292 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 HADHQ16836 314 aaKnown RBP14.21□□□□□ -0.13
SHMT2-222ENST00000555774 ZNF699Q32M78 642 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 ZC3H12AQ5D1E8 599 aaKnown RBP14.21□□□□□ -0.13
SHMT2-222ENST00000555774 PRUNE1Q86TP1 453 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 THNSL1Q8IYQ7 743 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 WDTC1Q8N5D0 677 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 PRPF31Q8WWY3 499 aaKnown RBP14.21□□□□□ -0.13
SHMT2-222ENST00000555774 TCHPQ9BT92 498 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 WDR35Q9P2L0 1181 aa14.21□□□□□ -0.13
SHMT2-222ENST00000555774 PSMC3IPQ9P2W1 217 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-222ENST00000555774 FARP1Q9Y4F1 1045 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-222ENST00000555774 LTBP3Q9NS15 1303 aa14.21□□□□□ -0.14
SHMT2-222ENST00000555774 C3orf70A6NLC5 250 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-222ENST00000555774 SIGLEC16A6NMB1 481 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 FOXO6A8MYZ6 492 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 ABLIM1O14639 778 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 ATP5HO75947 161 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 PRKCBP05771 671 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 ZSCAN5DPP0CG00 497 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 CCNB1P14635 433 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 FOXN2P32314 431 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms