RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 DEF6Q9H4E7 631 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 NOCTQ9UK39 431 aaKnown RBP11.49□□□□□ -0.57
TDP1-211ENST00000555178 C5orf42Q9H799 3197 aa11.49□□□□□ -0.57
TDP1-211ENST00000555178 M0QZQ0 153 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 TADA2AO75478 443 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 MMEP08473 750 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 OR4Q2P0C623 313 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 CHRNB2P17787 502 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 ZNF132P52740 706 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 RAD23BP54727 409 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 PSMC1P62191 440 aaKnown RBP11.48□□□□□ -0.57
TDP1-211ENST00000555178 MAPK8IP2Q13387 824 aaPredicted RBP11.48□□□□□ -0.57
TDP1-211ENST00000555178 FAM171A1Q5VUB5 890 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 FUT10Q6P4F1 479 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 PRSS55Q6UWB4 352 aaPredicted RBP11.48□□□□□ -0.57
TDP1-211ENST00000555178 CEP57Q86XR8 500 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 FIBCD1Q8N539 461 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 SLC4A11Q8NBS3 891 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 OR10T2Q8NGX3 314 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 PHOSPHO2Q8TCD6 241 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 SUSD3Q96L08 255 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 ZNF560Q96MR9 790 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 UROC1Q96N76 676 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 DAAM1Q9Y4D1 1078 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 EPN1Q9Y6I3 576 aaPredicted RBP11.48□□□□□ -0.57
TDP1-211ENST00000555178 PLXNA3P51805 1871 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 RCCD1A6NED2 376 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 DDX3XO00571 662 aaKnown RBP eCLIP11.48□□□□□ -0.57
TDP1-211ENST00000555178 ADAM12O43184 909 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 AKR1B10O60218 316 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 CILPO75339 1184 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 RPL17P18621 184 aaKnown RBP11.48□□□□□ -0.57
TDP1-211ENST00000555178 ACOT1Q86TX2 421 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 LRRTM3Q86VH5 581 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 ADGRF2Q8IZF7 708 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 KLHL23Q8NBE8 558 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 DDX1Q92499 740 aaKnown RBP11.48□□□□□ -0.57
TDP1-211ENST00000555178 CLP1Q92989 425 aaKnown RBP11.48□□□□□ -0.57
TDP1-211ENST00000555178 PCDHB18PQ96TA0 734 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 TMEM175Q9BSA9 504 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 ALG13Q9NP73 1137 aaKnown RBP11.48□□□□□ -0.57
TDP1-211ENST00000555178 SEPT11Q9NVA2 429 aaKnown RBP11.48□□□□□ -0.57
TDP1-211ENST00000555178 TMLHEQ9NVH6 421 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 TAS2R14Q9NYV8 317 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 CNTN6Q9UQ52 1028 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 ADGRG1Q9Y653 693 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 DOCK6Q96HP0 2047 aa11.48□□□□□ -0.57
TDP1-211ENST00000555178 EPOPA6NHQ4 379 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 TMCO5BA8MYB1 307 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 TMEM189-UBE2V1I3L0A0 370 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 NRDCO43847 1150 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 BRD2P25440 801 aaKnown RBP11.47□□□□□ -0.57
TDP1-211ENST00000555178 ALDH7A1P49419 539 aaKnown RBP11.47□□□□□ -0.57
TDP1-211ENST00000555178 PDE6CP51160 858 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 FMO1Q01740 532 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 FAM43BQ6ZT52 329 aaPredicted RBP11.47□□□□□ -0.57
TDP1-211ENST00000555178 RNF168Q8IYW5 571 aaPredicted RBP11.47□□□□□ -0.57
TDP1-211ENST00000555178 APPL2Q8NEU8 664 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 OR6B3Q8NGW1 331 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 ZNF558Q96NG5 402 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 PACSIN1Q9BY11 444 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 RHOBTB2Q9BYZ6 727 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 NKX2-4Q9H2Z4 354 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 TRIM10Q9UDY6 481 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 PUF60Q9UHX1 559 aaKnown RBP11.47□□□□□ -0.57
TDP1-211ENST00000555178 PPP2R2CQ9Y2T4 447 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 COL4A4P53420 1690 aaPredicted RBP11.47□□□□□ -0.57
TDP1-211ENST00000555178 SSU72P8A0A1W2PR75 194 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 ESPNB1AK53 854 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 C2CD2LO14523 706 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 GABRDO14764 452 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 HUS1O60921 280 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 P4HA1P13674 534 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 GNA15P30679 374 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 PNPLA4P41247 253 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 TAP1Q03518 808 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 INCA1Q0VD86 236 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 PASD1Q8IV76 773 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 AGPAT1Q99943 283 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 COLEC11Q9BWP8 271 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 CRTAC1Q9NQ79 661 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 TMEM30AQ9NV96 361 aa11.47□□□□□ -0.57
TDP1-211ENST00000555178 MYBPHLA2RUH7 354 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 RFXAPO00287 272 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 CLDN5O00501 218 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 FGF18O76093 207 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 CYLC1P35663 651 aaPredicted RBP11.46□□□□□ -0.57
TDP1-211ENST00000555178 GNL1P36915 607 aaPredicted RBP11.46□□□□□ -0.57
TDP1-211ENST00000555178 CAMK1Q14012 370 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 SLC18A3Q16572 532 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 VARS2Q5ST30 1063 aaKnown RBP11.46□□□□□ -0.57
TDP1-211ENST00000555178 DPH6Q7L8W6 267 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 CCDC170Q8IYT3 715 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 CCAR2Q8N163 923 aaKnown RBP11.46□□□□□ -0.57
TDP1-211ENST00000555178 TOP6BLQ8N6T0 577 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 SLC30A5Q8TAD4 765 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 JAKMIP2Q96AA8 810 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 PPP1R13BQ96KQ4 1090 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 FAM81BQ96LP2 452 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 FAM49BQ9NUQ9 324 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms