RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 RBAKQ9NYW8 714 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-214ENST00000554604 DNMT3BQ9UBC3 853 aaKnown RBP13.37□□□□□ -0.27
SHMT2-214ENST00000554604 AFF4Q9UHB7 1163 aaKnown RBP13.37□□□□□ -0.27
SHMT2-214ENST00000554604 MAFFQ9ULX9 164 aa13.37□□□□□ -0.27
SHMT2-214ENST00000554604 DUSP12Q9UNI6 340 aa13.37□□□□□ -0.27
SHMT2-214ENST00000554604 MRPS23Q9Y3D9 190 aaKnown RBP13.37□□□□□ -0.27
SHMT2-214ENST00000554604 ITIH6Q6UXX5 1313 aa13.37□□□□□ -0.27
SHMT2-214ENST00000554604 ANO9A1A5B4 782 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 GOLGA8IPA6NC78 632 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 OR6C75A6NL08 312 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 GOLGA8JA6NMD2 632 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 EXTL3O43909 919 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 SEC24AO95486 1093 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 PDGFBP01127 241 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-214ENST00000554604 RHOP08100 348 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 TYMPP19971 482 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 EEF1GP26641 437 aaKnown RBP13.36□□□□□ -0.27
SHMT2-214ENST00000554604 TAF6P49848 677 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 HSP90AA4PQ58FG1 418 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 TCP11X2Q5H9J9 407 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 FAM26FQ5R3K3 315 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 IQCEQ6IPM2 695 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 TTI2Q6NXR4 508 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 FOXR2Q6PJQ5 311 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 RNF19BQ6ZMZ0 732 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 METTL23Q86XA0 190 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 BRSK2Q8IWQ3 736 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 EFCAB13Q8IY85 973 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 SLC44A3Q8N4M1 653 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 ZSWIM2Q8NEG5 633 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 ITFG1Q8TB96 612 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 ING5Q8WYH8 240 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 CORO1BQ9BR76 489 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 DSEQ9UL01 958 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 R3HCC1Q9Y3T6 440 aaKnown RBP13.36□□□□□ -0.27
SHMT2-214ENST00000554604 INSL5Q9Y5Q6 135 aa13.36□□□□□ -0.27
SHMT2-214ENST00000554604 KCNJ18B7U540 433 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 CYB561D2O14569 222 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 KIAA0391O15091 583 aaKnown RBP13.35□□□□□ -0.27
SHMT2-214ENST00000554604 SPTLC1O15269 473 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 EIF3DO15371 548 aaKnown RBP eCLIP13.35□□□□□ -0.27
SHMT2-214ENST00000554604 NARSO43776 548 aaKnown RBP13.35□□□□□ -0.27
SHMT2-214ENST00000554604 TPM2P07951 284 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 OR4Q2P0C623 313 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 RFX1P22670 979 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 COPB1P53618 953 aaKnown RBP13.35□□□□□ -0.27
SHMT2-214ENST00000554604 EHHADHQ08426 723 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 HTR4Q13639 388 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 KCNJ12Q14500 433 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 KRT31Q15323 416 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 SV2CQ496J9 727 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 MTSS1LQ765P7 747 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 CCAR2Q8N163 923 aaKnown RBP13.35□□□□□ -0.27
SHMT2-214ENST00000554604 GPD1LQ8N335 351 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 GLIS3Q8NEA6 775 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 ST13P5Q8NFI4 369 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-214ENST00000554604 ZNF512Q96ME7 567 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-214ENST00000554604 ZNF560Q96MR9 790 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 PGLYRP2Q96PD5 576 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 PRRX2Q99811 253 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 NUMBLQ9Y6R0 609 aa13.35□□□□□ -0.27
SHMT2-214ENST00000554604 ZNF233A6NK53 670 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 ANHXE9PGG2 379 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 STK25O00506 426 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 ZNF197O14709 1029 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 CCP110O43303 1012 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 CFHP08603 1231 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 TMEM191BP0C7N4 346 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 SRFP11831 508 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 AVPR2P30518 371 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 PNPLA4P41247 253 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 VCPP55072 806 aaKnown RBP13.34□□□□□ -0.27
SHMT2-214ENST00000554604 TWF1Q12792 350 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 STK4Q13043 487 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 GPR17Q13304 367 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 MYBPC2Q14324 1141 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 IER5LQ5T953 404 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 CYP4A22Q5TCH4 519 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 PDZD4Q76G19 769 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-214ENST00000554604 HS2ST1Q7LGA3 356 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 IRF2BP1Q8IU81 584 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 FAM114A1Q8IWE2 563 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 NPAS3Q8IXF0 933 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 SIX5Q8N196 739 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 THEM5Q8N1Q8 247 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 GUF1Q8N442 669 aaKnown RBP13.34□□□□□ -0.27
SHMT2-214ENST00000554604 FLCNQ8NFG4 579 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 DUSP9Q99956 384 aaKnown RBP13.34□□□□□ -0.27
SHMT2-214ENST00000554604 PDE11AQ9HCR9 933 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 AGAP1Q9UPQ3 857 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 MAPK8IP1Q9UQF2 711 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 ZNF638Q14966 1978 aaKnown RBP13.34□□□□□ -0.27
SHMT2-214ENST00000554604 UBE4BO95155 1302 aa13.34□□□□□ -0.27
SHMT2-214ENST00000554604 TRIM49BA6NDI0 452 aa13.33□□□□□ -0.28
SHMT2-214ENST00000554604 KPNA7A9QM74 516 aa13.33□□□□□ -0.28
SHMT2-214ENST00000554604 KIF2AO00139 706 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-214ENST00000554604 TEX33O43247 280 aa13.33□□□□□ -0.28
SHMT2-214ENST00000554604 ITGB3P05106 788 aa13.33□□□□□ -0.28
SHMT2-214ENST00000554604 CYP11A1P05108 521 aa13.33□□□□□ -0.28
SHMT2-214ENST00000554604 KRT19P08727 400 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms