RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 DCTN4Q9UJW0 460 aa18.48■□□□□ 0.55
SYNE3-202ENST00000553340 WDR91A4D1P6 747 aa18.48■□□□□ 0.55
SYNE3-202ENST00000553340 DPPA5A6NC42 116 aa18.48■□□□□ 0.55
SYNE3-202ENST00000553340 C4BPAP04003 597 aaKnown RBP18.48■□□□□ 0.55
SYNE3-202ENST00000553340 MYCLP12524 364 aaPredicted RBP18.48■□□□□ 0.55
SYNE3-202ENST00000553340 TCF4P15884 667 aa18.48■□□□□ 0.55
SYNE3-202ENST00000553340 CTCFP49711 727 aaPredicted RBP18.48■□□□□ 0.55
SYNE3-202ENST00000553340 GPX6P59796 221 aa18.48■□□□□ 0.55
SYNE3-202ENST00000553340 MUM1Q2TAK8 710 aa18.48■□□□□ 0.55
SYNE3-202ENST00000553340 WDR72Q3MJ13 1102 aa18.48■□□□□ 0.55
SYNE3-202ENST00000553340 NLGN1Q8N2Q7 840 aa18.48■□□□□ 0.55
SYNE3-202ENST00000553340 CFAP61Q8NHU2 1237 aa18.48■□□□□ 0.55
SYNE3-202ENST00000553340 NKD2Q969F2 451 aaPredicted RBP18.48■□□□□ 0.55
SYNE3-202ENST00000553340 IVNS1ABPQ9Y6Y0 642 aa18.48■□□□□ 0.55
SYNE3-202ENST00000553340 LRRD1A4D1F6 860 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 MYCNP04198 464 aaPredicted RBP18.47■□□□□ 0.55
SYNE3-202ENST00000553340 PDHA1P08559 390 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 KLC1Q07866 573 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 PYROXD1Q8WU10 500 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 HAUS1Q96CS2 278 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 MIPEPQ99797 713 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 TMEM121Q9BTD3 319 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 RGPD3A6NKT7 1758 aaPredicted RBP18.47■□□□□ 0.55
SYNE3-202ENST00000553340 RGPD4Q7Z3J3 1758 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 TMEM191CA6NGB0 347 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 GOLGA8SH3BPF8 625 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 GOLGA8MH3BSY2 632 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 TM9SF1O15321 606 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 TMEM191BP0C7N4 346 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 GHRHRQ02643 423 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 PGM5Q15124 567 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 CCDC6Q16204 474 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 TFDP3Q5H9I0 405 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 APLFQ8IW19 511 aaPredicted RBP18.47■□□□□ 0.55
SYNE3-202ENST00000553340 CPXCR1Q8N123 301 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 ATP11CQ8NB49 1132 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 TCP10LQ8TDR4 215 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 FAM151AQ8WW52 585 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 TAAR1Q96RJ0 339 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 TRIM55Q9BYV6 548 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 GLIS2Q9BZE0 524 aaPredicted RBP18.47■□□□□ 0.55
SYNE3-202ENST00000553340 VPS11Q9H270 941 aa18.47■□□□□ 0.55
SYNE3-202ENST00000553340 hCG_1818297A0A087WSY0 165 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 CLRN2A0PK11 232 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 ENO4A6NNW6 628 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 BANF1O75531 89 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 HAUS5O94927 633 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 LIG4P49917 911 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 TFDP1Q14186 410 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 KLHL38Q2WGJ6 581 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 KHDC1Q4VXA5 237 aaKnown RBP18.46■□□□□ 0.55
SYNE3-202ENST00000553340 ADGRD1Q6QNK2 874 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 ALKBH8Q96BT7 664 aaKnown RBP18.46■□□□□ 0.55
SYNE3-202ENST00000553340 BTBD10Q9BSF8 475 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 CADM1Q9BY67 442 aaKnown RBP18.46■□□□□ 0.55
SYNE3-202ENST00000553340 HOMER2Q9NSB8 354 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.46■□□□□ 0.55
SYNE3-202ENST00000553340 CLUHO75153 1309 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 ZNF646O15015 1829 aaPredicted RBP18.46■□□□□ 0.55
SYNE3-202ENST00000553340 NVLO15381 856 aaKnown RBP18.46■□□□□ 0.55
SYNE3-202ENST00000553340 MMP8P22894 467 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 GLRA2P23416 452 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 RXRBP28702 533 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 SSTR1P30872 391 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 PTPN7P35236 360 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 OVGP1Q12889 678 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 LBRQ14739 615 aaKnown RBP18.46■□□□□ 0.55
SYNE3-202ENST00000553340 APBB1IPQ7Z5R6 666 aaPredicted RBP18.46■□□□□ 0.55
SYNE3-202ENST00000553340 RFWD2Q8NHY2 731 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 PAFAH2Q99487 392 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 MANSC1Q9H8J5 431 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 APOBEC3GQ9HC16 384 aaKnown RBP18.46■□□□□ 0.55
SYNE3-202ENST00000553340 PCDHA10Q9Y5I2 948 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 NUMBLQ9Y6R0 609 aa18.46■□□□□ 0.55
SYNE3-202ENST00000553340 A0A0G2JND7 137 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 VNN1O95497 513 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 VHLP40337 213 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 ARL4CP56559 192 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 EFTUD2Q15029 972 aaKnown RBP eCLIP18.45■□□□□ 0.543e-7■■■■□ 25.9
SYNE3-202ENST00000553340 RFWD3Q6PCD5 774 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 ZNF276Q8N554 614 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 MCPH1Q8NEM0 835 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 RDM1Q8NG50 284 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 PHACTR1Q9C0D0 580 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 KANSL3Q9P2N6 904 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 HEY2Q9UBP5 337 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 FARP1Q9Y4F1 1045 aaPredicted RBP18.45■□□□□ 0.54
SYNE3-202ENST00000553340 COL11A2P13942 1736 aaPredicted RBP18.45■□□□□ 0.54
SYNE3-202ENST00000553340 TESPA1A2RU30 521 aaPredicted RBP18.45■□□□□ 0.54
SYNE3-202ENST00000553340 CFAP69A5D8W1 941 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 F8VP50 259 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 H0YCG3 227 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 TBXAS1P24557 533 aaPredicted RBP18.45■□□□□ 0.54
SYNE3-202ENST00000553340 SGSM1Q2NKQ1 1148 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 C3orf62Q6ZUJ4 267 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 TAS1R3Q7RTX0 852 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 PPIL6Q8IXY8 311 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 ACSS3Q9H6R3 686 aa18.45■□□□□ 0.54
SYNE3-202ENST00000553340 DDX56Q9NY93 547 aaKnown RBP18.45■□□□□ 0.54
SYNE3-202ENST00000553340 MAP3K20Q9NYL2 800 aaKnown RBP18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms