RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 CEP72Q9P209 647 aa16.45■□□□□ 0.22
SHMT2-204ENST00000553324 PCDHB5Q9Y5E4 795 aa16.45■□□□□ 0.22
SHMT2-204ENST00000553324 CETN3O15182 167 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 TACC1O75410 805 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 VNN2O95498 520 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 C4BPAP04003 597 aaKnown RBP16.44■□□□□ 0.22
SHMT2-204ENST00000553324 P4HA1P13674 534 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 PRCPP42785 496 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 CASP4P49662 377 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 VAMP7P51809 220 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 EPHA5P54756 1037 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 TNNC1P63316 161 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 SGSM1Q2NKQ1 1148 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 DNAJB7Q7Z6W7 309 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-204ENST00000553324 LRRTM3Q86VH5 581 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 SLC44A3Q8N4M1 653 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 PSMG2Q969U7 264 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 PBXIP1Q96AQ6 731 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 MKNK1Q9BUB5 465 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 GZF1Q9H116 711 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-204ENST00000553324 ABCB6Q9NP58 842 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 CDH9Q9ULB4 789 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 DUSP12Q9UNI6 340 aa16.44■□□□□ 0.22
SHMT2-204ENST00000553324 GADD45BO75293 160 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-204ENST00000553324 AKAP3O75969 853 aa16.43■□□□□ 0.22
SHMT2-204ENST00000553324 HAPLN1P10915 354 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-204ENST00000553324 WARSP23381 471 aaKnown RBP16.43■□□□□ 0.22
SHMT2-204ENST00000553324 GNL1P36915 607 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-204ENST00000553324 FKBP3Q00688 224 aaKnown RBP16.43■□□□□ 0.22
SHMT2-204ENST00000553324 NCOA4Q13772 614 aa16.43■□□□□ 0.22
SHMT2-204ENST00000553324 TAF12Q16514 161 aa16.43■□□□□ 0.22
SHMT2-204ENST00000553324 ZCWPW2Q504Y3 356 aa16.43■□□□□ 0.22
SHMT2-204ENST00000553324 INTS6LQ5JSJ4 861 aaKnown RBP16.43■□□□□ 0.22
SHMT2-204ENST00000553324 PRSS36Q5K4E3 855 aa16.43■□□□□ 0.22
SHMT2-204ENST00000553324 TDRD10Q5VZ19 366 aaKnown RBP16.43■□□□□ 0.22
SHMT2-204ENST00000553324 SCARA3Q6AZY7 606 aa16.43■□□□□ 0.22
SHMT2-204ENST00000553324 NPAS3Q8IXF0 933 aa16.43■□□□□ 0.22
SHMT2-204ENST00000553324 FAM186BQ8IYM0 893 aa16.43■□□□□ 0.22
SHMT2-204ENST00000553324 FAM200AQ8TCP9 573 aa16.43■□□□□ 0.22
SHMT2-204ENST00000553324 TAF4BQ92750 862 aa16.43■□□□□ 0.22
SHMT2-204ENST00000553324 FUBP3Q96I24 572 aaKnown RBP eCLIP16.43■□□□□ 0.22
SHMT2-204ENST00000553324 FAM84AQ96KN4 292 aa16.43■□□□□ 0.22
SHMT2-204ENST00000553324 SEPT5Q99719 369 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-204ENST00000553324 CRISPLD1Q9H336 500 aa16.43■□□□□ 0.22
SHMT2-204ENST00000553324 SNX25Q9H3E2 840 aa16.43■□□□□ 0.22
SHMT2-204ENST00000553324 ABI2Q9NYB9 513 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-204ENST00000553324 ANK1P16157 1881 aa16.43■□□□□ 0.22
SHMT2-204ENST00000553324 SCN1AP35498 2009 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 GTF2H1P32780 548 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 MYL6P60660 151 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 RPL10AP62906 217 aaKnown RBP16.42■□□□□ 0.22
SHMT2-204ENST00000553324 LRRC63Q05C16 580 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 HTR4Q13639 388 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 ZACNQ401N2 412 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 FAM171BQ6P995 826 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 C4orf50Q6ZRC1 276 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 SV2AQ7L0J3 742 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 SMYD4Q8IYR2 804 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-204ENST00000553324 PLEKHO2Q8TD55 490 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 MCRS1Q96EZ8 462 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 ASIC4Q96FT7 647 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 DHTKD1Q96HY7 919 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-204ENST00000553324 XYLT2Q9H1B5 865 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 GTF3C4Q9UKN8 822 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 NUMBLQ9Y6R0 609 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 TRIOO75962 3097 aa16.42■□□□□ 0.22
SHMT2-204ENST00000553324 PSMA7O14818 248 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 STX10O60499 249 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 EPB41P11171 864 aaKnown RBP16.41■□□□□ 0.22
SHMT2-204ENST00000553324 SRFP11831 508 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 MYL4P12829 197 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 COL9A1P20849 921 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 MCCD1P59942 119 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-204ENST00000553324 DLG4P78352 724 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 SLC5A9Q2M3M2 681 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 ZNF699Q32M78 642 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 CFAP221Q4G0U5 840 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 ZNF667Q5HYK9 610 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 PARM1Q6UWI2 310 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 HFE2Q6ZVN8 426 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 SPATA2LQ8IUW3 424 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-204ENST00000553324 SUGP1Q8IWZ8 645 aaKnown RBP16.41■□□□□ 0.22
SHMT2-204ENST00000553324 HS6ST3Q8IZP7 471 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 ADSSL1Q8N142 457 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 OR6B3Q8NGW1 331 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 KBTBD7Q8WVZ9 684 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 RSAD2Q8WXG1 361 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 DNAJC25Q9H1X3 360 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 MAGEC2Q9UBF1 373 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-204ENST00000553324 NXF1Q9UBU9 619 aaKnown RBP16.41■□□□□ 0.22
SHMT2-204ENST00000553324 WNT16Q9UBV4 365 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 ZMYM5Q9UJ78 669 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 HCN4Q9Y3Q4 1203 aa16.41■□□□□ 0.22
SHMT2-204ENST00000553324 ARIH1Q9Y4X5 557 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-204ENST00000553324 C2orf16Q68DN1 1984 aa16.4■□□□□ 0.22
SHMT2-204ENST00000553324 ECI2O75521 394 aa16.4■□□□□ 0.22
SHMT2-204ENST00000553324 CLSTN1O94985 981 aa16.4■□□□□ 0.22
SHMT2-204ENST00000553324 PDGFRBP09619 1106 aa16.4■□□□□ 0.22
SHMT2-204ENST00000553324 ACAT1P24752 427 aaKnown RBP16.4■□□□□ 0.22
SHMT2-204ENST00000553324 LMO2P25791 158 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms