RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 DNAJB3Q8WWF6 145 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 HPDLQ96IR7 371 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 C12orf42Q96LP6 360 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 ADPGKQ9BRR6 497 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 TIPINQ9BVW5 301 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 DCLK3Q9C098 648 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 RASSF4Q9H2L5 321 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 C17orf75Q9HAS0 396 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 KIAA1586Q9HCI6 787 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 MRPL47Q9HD33 250 aaKnown RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-215ENST00000552823 CYTH4Q9UIA0 394 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 ADAMTS5Q9UNA0 930 aa5.91□□□□□ -1.46
LIMA1-215ENST00000552823 KIAA1217Q5T5P2 1943 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 QSER1Q2KHR3 1735 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 NFASCO94856 1347 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 LAMA2P24043 3122 aaKnown RBP5.9□□□□□ -1.46
LIMA1-215ENST00000552823 HMGB1P1B2RPK0 211 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-215ENST00000552823 ASS1P00966 412 aaKnown RBP5.9□□□□□ -1.46
LIMA1-215ENST00000552823 GH1P01241 217 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 RFX1P22670 979 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 NDST1P52848 882 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 CDH6P55285 790 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 PDIA2Q13087 525 aaKnown RBP5.9□□□□□ -1.46
LIMA1-215ENST00000552823 TFDP1Q14186 410 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 CCL14Q16627 93 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 SGSM1Q2NKQ1 1148 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 C11orf63Q6NUN7 778 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 ZNF572Q7Z3I7 529 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-215ENST00000552823 CTAGE3PQ8IX95 158 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 LRRC34Q8IZ02 419 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 KCTD17Q8N5Z5 321 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 CCDC89Q8N998 374 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 MYCBPAPQ8TBZ2 947 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 ACTL9Q8TC94 416 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 RSAD2Q8WXG1 361 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 DDX27Q96GQ7 796 aaKnown RBP5.9□□□□□ -1.46
LIMA1-215ENST00000552823 RPS6KC1Q96S38 1066 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 RBM15Q96T37 977 aaKnown RBP eCLIP5.9□□□□□ -1.46
LIMA1-215ENST00000552823 MPHOSPH6Q99547 160 aaKnown RBP5.9□□□□□ -1.46
LIMA1-215ENST00000552823 SH3GL2Q99962 352 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 SENP7Q9BQF6 1050 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 MAK16Q9BXY0 300 aaKnown RBP5.9□□□□□ -1.46
LIMA1-215ENST00000552823 EIF2AQ9BY44 585 aaKnown RBP5.9□□□□□ -1.46
LIMA1-215ENST00000552823 ELOVL4Q9GZR5 314 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 RNF39Q9H2S5 420 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 PABPC3Q9H361 631 aaKnown RBP5.9□□□□□ -1.46
LIMA1-215ENST00000552823 ST6GALNAC4Q9H4F1 302 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 RRAGCQ9HB90 399 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 PARVAQ9NVD7 372 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 FEZ2Q9UHY8 353 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-215ENST00000552823 GRIN2DO15399 1336 aa5.9□□□□□ -1.46
LIMA1-215ENST00000552823 FOCADQ5VW36 1801 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 FAM187AA6NFU0 413 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 H0YGN5 161 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 ACKR2O00590 384 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 HBP1O60381 514 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 HOXC6P09630 235 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 PDGFRAP16234 1089 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 IL1R2P27930 398 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 SSTR1P30872 391 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 RFC5P40937 340 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 OTUD4Q01804 1114 aaKnown RBP5.9□□□□□ -1.47
LIMA1-215ENST00000552823 SNAPC2Q13487 334 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 ZNF618Q5T7W0 954 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 NUGGCQ68CJ6 796 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 PPP1R21Q6ZMI0 780 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 CCDC121Q6ZUS5 278 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 MON1BQ7L1V2 547 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 FMNL3Q8IVF7 1028 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 WDTC1Q8N5D0 677 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 ARFGAP2Q8N6H7 521 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 ATL2Q8NHH9 583 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 HASPINQ8TF76 798 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 FGD4Q96M96 766 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 TRIM56Q9BRZ2 755 aaKnown RBP5.9□□□□□ -1.47
LIMA1-215ENST00000552823 GINM1Q9NU53 330 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 ZDHHC18Q9NUE0 388 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 PSD3Q9NYI0 1048 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 ERAP1Q9NZ08 941 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 SEPT10Q9P0V9 454 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 PIN4Q9Y237 131 aaKnown RBP5.9□□□□□ -1.47
LIMA1-215ENST00000552823 NFS1Q9Y697 457 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 DOCK3Q8IZD9 2030 aa5.9□□□□□ -1.47
LIMA1-215ENST00000552823 GREB1LQ9C091 1923 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 GMNCA6NCL1 334 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 SPDYE5A6NIY4 337 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 I3L4J1 428 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 RIPK2O43353 540 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 AVILO75366 819 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 ITGBL1O95965 494 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 BRAFP15056 766 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 GDF10P55107 478 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 DHX34Q14147 1143 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 KRT81Q14533 505 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 MXD4Q14582 209 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 EFTUD2Q15029 972 aaKnown RBP eCLIP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 TARBP2Q15633 366 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 SLC10A6Q3KNW5 377 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 ZC3H12AQ5D1E8 599 aaKnown RBP5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms