RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 OR5B17Q8NGF7 314 aa12.68□□□□□ -0.38
HDAC4-216ENST00000544989 OR10T2Q8NGX3 314 aa12.68□□□□□ -0.38
HDAC4-216ENST00000544989 SYAP1Q96A49 352 aaPredicted RBP12.68□□□□□ -0.38
HDAC4-216ENST00000544989 CCDC127Q96BQ5 260 aa12.68□□□□□ -0.38
HDAC4-216ENST00000544989 PGLYRP2Q96PD5 576 aa12.68□□□□□ -0.38
HDAC4-216ENST00000544989 MFSD1Q9H3U5 465 aa12.68□□□□□ -0.38
HDAC4-216ENST00000544989 HCFC1R1Q9NWW0 138 aa12.68□□□□□ -0.38
HDAC4-216ENST00000544989 L1RE1Q9UN81 338 aa12.68□□□□□ -0.38
HDAC4-216ENST00000544989 PCDHB5Q9Y5E4 795 aa12.68□□□□□ -0.38
HDAC4-216ENST00000544989 ZNF292O60281 2723 aa12.68□□□□□ -0.38
HDAC4-216ENST00000544989 IKBKBO14920 756 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 PHACTR2O75167 634 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 ECI2O75521 394 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 TNNC1P63316 161 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 CLDN10P78369 228 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 PFKPQ01813 784 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 TAF12Q16514 161 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 MGAT5BQ3V5L5 792 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 PRSS36Q5K4E3 855 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 LMBRD2Q68DH5 695 aaPredicted RBP12.67□□□□□ -0.38
HDAC4-216ENST00000544989 LIMS2Q7Z4I7 341 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 ATAD1Q8NBU5 361 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 ITFG1Q8TB96 612 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 TMC2Q8TDI7 906 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 PARD3BQ8TEW8 1205 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 PSMG2Q969U7 264 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 E2F7Q96AV8 911 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 FUBP3Q96I24 572 aaKnown RBP eCLIP12.67□□□□□ -0.383e-11■■■■■ 28.9
HDAC4-216ENST00000544989 SEPT5Q99719 369 aaPredicted RBP12.67□□□□□ -0.38
HDAC4-216ENST00000544989 RTP3Q9BQQ7 232 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 SLC2A4RGQ9NR83 387 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 DDX43Q9NXZ2 648 aaKnown RBP12.67□□□□□ -0.38
HDAC4-216ENST00000544989 CEP72Q9P209 647 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 NUMBLQ9Y6R0 609 aa12.67□□□□□ -0.38
HDAC4-216ENST00000544989 GABRDO14764 452 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 TACC1O75410 805 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 PRR29P0C7W0 189 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 P4HA1P13674 534 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 WARSP23381 471 aaKnown RBP12.66□□□□□ -0.38
HDAC4-216ENST00000544989 ANP32AP39687 249 aaKnown RBP12.66□□□□□ -0.38
HDAC4-216ENST00000544989 PPP1R2P41236 205 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 RPL10AP62906 217 aaKnown RBP12.66□□□□□ -0.38
HDAC4-216ENST00000544989 BIRC3Q13489 604 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 SNW1Q13573 536 aaKnown RBP12.66□□□□□ -0.38
HDAC4-216ENST00000544989 SOWAHAQ2M3V2 549 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 EDRF1Q3B7T1 1238 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 ARHGAP15Q53QZ3 475 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 COBLL1Q53SF7 1204 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 INTS6LQ5JSJ4 861 aaKnown RBP12.66□□□□□ -0.38
HDAC4-216ENST00000544989 C4orf50Q6ZRC1 276 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 INTS8Q75QN2 995 aaKnown RBP12.66□□□□□ -0.38
HDAC4-216ENST00000544989 ENGASEQ8NFI3 743 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 FAM200AQ8TCP9 573 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 ELSPBP1Q96BH3 223 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 SHDQ96IW2 340 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 CEP295NLQ96MC4 621 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 GCNAQ96QF7 691 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 TMEM209Q96SK2 561 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 MMS19Q96T76 1030 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 IRF2BPLQ9H1B7 796 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 VRTNQ9H8Y1 702 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 ABI2Q9NYB9 513 aaPredicted RBP12.66□□□□□ -0.38
HDAC4-216ENST00000544989 CDH9Q9ULB4 789 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 SLC27A5Q9Y2P5 690 aa12.66□□□□□ -0.38
HDAC4-216ENST00000544989 PTPRJQ12913 1337 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 TSC2P49815 1807 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 KINO60870 393 aaKnown RBP12.65□□□□□ -0.38
HDAC4-216ENST00000544989 VNN2O95498 520 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 HAPLN1P10915 354 aaPredicted RBP12.65□□□□□ -0.38
HDAC4-216ENST00000544989 MYL4P12829 197 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 KRT13P13646 458 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 CEBPBP17676 345 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 TRIM21P19474 475 aaKnown RBP12.65□□□□□ -0.38
HDAC4-216ENST00000544989 RFX1P22670 979 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 NR2F2P24468 414 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 CDC25CP30307 473 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 PSMC2P35998 433 aaKnown RBP12.65□□□□□ -0.38
HDAC4-216ENST00000544989 CLCN5P51795 746 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 STIM1Q13586 685 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 SLC5A9Q2M3M2 681 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 CFAP221Q4G0U5 840 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 ZNF658Q5TYW1 1059 aaPredicted RBP12.65□□□□□ -0.38
HDAC4-216ENST00000544989 CEP135Q66GS9 1140 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 ASTLQ6HA08 431 aaPredicted RBP12.65□□□□□ -0.38
HDAC4-216ENST00000544989 PARM1Q6UWI2 310 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 DNAJB7Q7Z6W7 309 aaPredicted RBP12.65□□□□□ -0.38
HDAC4-216ENST00000544989 ING5Q8WYH8 240 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 TAF4BQ92750 862 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 FGF14Q92915 247 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 SMARCD2Q92925 531 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 SMARCE1Q969G3 411 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 MCRS1Q96EZ8 462 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 TSG101Q99816 390 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 MKNK1Q9BUB5 465 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 SNX25Q9H3E2 840 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 SLITRK6Q9H5Y7 841 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 ZFP14Q9HCL3 533 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 CHMP5Q9NZZ3 219 aa12.65□□□□□ -0.38
HDAC4-216ENST00000544989 UXTQ9UBK9 157 aaPredicted RBP12.65□□□□□ -0.38
HDAC4-216ENST00000544989 DOCK6Q96HP0 2047 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms