RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PUS7LQ9H0K6 701 aaKnown RBP9.12□□□□□ -0.95
YBX3-208ENST00000540447 GPHNQ9NQX3 736 aaPredicted RBP9.12□□□□□ -0.95
YBX3-208ENST00000540447 GJB4Q9NTQ9 266 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 ZNF222Q9UK12 451 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 DENND2AQ9ULE3 1009 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 FADS3Q9Y5Q0 445 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 APOL1O14791 398 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 FAM20BO75063 409 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 BCAP31P51572 246 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 NCALDP61601 193 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 CARTPTQ16568 116 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 SIRT2Q8IXJ6 389 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 LRRC17Q8N6Y2 441 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 GLG1Q92896 1179 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 TAMM41Q96BW9 452 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 ACCSQ96QU6 501 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 SERHL2Q9H4I8 314 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 RERGLQ9H628 205 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 SERHLQ9NQF3 203 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 DNAJC11Q9NVH1 559 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 KDM5DQ9BY66 1539 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 WASLO00401 505 aaPredicted RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 SLC39A6Q13433 755 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 DRAP1Q14919 205 aaPredicted RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 DDB1Q16531 1140 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 NRF1Q16656 503 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 LACTB2Q53H82 288 aaPredicted RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 KCNT1Q5JUK3 1230 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 C6orf10Q5SRN2 563 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 PDPK2PQ6A1A2 396 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 RNF135Q8IUD6 432 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 UXS1Q8NBZ7 420 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 WDR36Q8NI36 951 aaKnown RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 ERLEC1Q96DZ1 483 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 NUAK2Q9H093 628 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 TRMT6Q9UJA5 497 aaKnown RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 NCOA3Q9Y6Q9 1424 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 ZBTB11O95625 1053 aaPredicted RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 FAM153BP0C7A2 387 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 HSPA2P54652 639 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 CHRNB3Q05901 458 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 SMAD1Q15797 465 aaKnown RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 SLC15A2Q16348 729 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 FAM153CQ494X1 144 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 SH3KBP1Q96B97 665 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 ZNF594Q96JF6 807 aaPredicted RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 C17orf80Q9BSJ5 609 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 MTG1Q9BT17 334 aaPredicted RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 AQRO60306 1485 aaKnown RBP eCLIP9.11□□□□□ -0.959e-7■■■■□ 22.7
YBX3-208ENST00000540447 ZNF521Q96K83 1311 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 PCF11O94913 1555 aaKnown RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 MED7O43513 233 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 COILP38432 576 aaPredicted RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 XIAPP98170 497 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 MAPK7Q13164 816 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 SCARA3Q6AZY7 606 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 TTC30AQ86WT1 665 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 NDUFAF2Q8N183 169 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 OR8H1Q8NGG4 311 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 CNKSR1Q969H4 720 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 EPB41L1Q9H4G0 881 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 PSTPIP2Q9H939 334 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 KCND1Q9NSA2 647 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 MAD2L2Q9UI95 211 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 CNOT7Q9UIV1 285 aaKnown RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 FAM32AQ9Y421 112 aaKnown RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 HEY1Q9Y5J3 304 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 TRAPPC8Q9Y2L5 1435 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 EFCAB10A6NFE3 127 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 H0YCG3 227 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 SH2B2O14492 632 aaPredicted RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 MAP3K13O43283 966 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 PRPF3O43395 683 aaKnown RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 VBP1P61758 197 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 DMP1Q13316 513 aaPredicted RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 USF2Q15853 346 aaPredicted RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 PARP6Q2NL67 630 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 AKAP4Q5JQC9 854 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 LRRC8DQ7L1W4 858 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 KYQ8NBH2 561 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 ASB12Q8WXK4 309 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 USP13Q92995 863 aaPredicted RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 METTL22Q9BUU2 404 aaPredicted RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 C15orf38-AP3S2A0A0A6YYH1 394 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 MTRF1O75570 445 aaKnown RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 RAB25P57735 213 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 MMRN1Q13201 1228 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 MTFR1Q15390 333 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 ERMARDQ5T6L9 678 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 ARPINQ7Z6K5 226 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 CD302Q8IX05 232 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 METTL13Q8N6R0 699 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 NUDT12Q9BQG2 462 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 MXD3Q9BW11 206 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 SPATA16Q9BXB7 569 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 ZC3H7BQ9UGR2 993 aaKnown RBP9.11□□□□□ -0.95
YBX3-208ENST00000540447 VPS4AQ9UN37 437 aa9.11□□□□□ -0.95
YBX3-208ENST00000540447 UTYO14607 1347 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 EPRSP07814 1512 aaKnown RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 A0A1W2PQJ5 194 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms