RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 GOLGA1Q92805 767 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 MSLNLQ96KJ4 702 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 TMEM175Q9BSA9 504 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 ANKFY1Q9P2R3 1169 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 KCNG1Q9UIX4 513 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 SALL4Q9UJQ4 1053 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 DAAM1Q9Y4D1 1078 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 SAR1BQ9Y6B6 198 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 MEFVO15553 781 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-208ENST00000537004 GFPT2O94808 682 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 PNMA6AP0CW24 399 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-208ENST00000537004 FERP16591 822 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 PROZP22891 400 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 ANXA13P27216 316 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 SOX5P35711 763 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 MCCD1P59942 119 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-208ENST00000537004 GRIK3Q13003 919 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 STRN3Q13033 797 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 KCNC3Q14003 757 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 SMC1AQ14683 1233 aaKnown RBP12.78□□□□□ -0.36
CLIP1-208ENST00000537004 DRAP1Q14919 205 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-208ENST00000537004 NAB2Q15742 525 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 DCAF4L1Q3SXM0 396 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 PDE12Q6L8Q7 609 aaKnown RBP12.78□□□□□ -0.36
CLIP1-208ENST00000537004 FEZF2Q8TBJ5 459 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 POMGNT1Q8WZA1 660 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 BICD1Q96G01 975 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 ALS2CR12Q96Q35 445 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 HAPLN2Q9GZV7 340 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 GOLGA2P5Q9HBQ8 144 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 CDH22Q9UJ99 828 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 WDFY4Q6ZS81 3184 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 THP07101 528 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 CTSAP10619 480 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 RFX1P22670 979 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 MXI1P50539 228 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 C10orf76Q5T2E6 689 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 PHLDB3Q6NSJ2 640 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 TMEM130Q8N3G9 435 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 RNF10Q8N5U6 811 aaKnown RBP12.78□□□□□ -0.36
CLIP1-208ENST00000537004 FBXL18Q96ME1 805 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 GPR62Q9BZJ7 368 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 GPR88Q9GZN0 384 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 JRKLQ9Y4A0 524 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 HCFC2Q9Y5Z7 792 aa12.78□□□□□ -0.36
CLIP1-208ENST00000537004 PMM2O15305 246 aa12.77□□□□□ -0.37
CLIP1-208ENST00000537004 CLASP2O75122 1294 aaKnown RBP12.77□□□□□ -0.37
CLIP1-208ENST00000537004 H2AFXP16104 143 aaPredicted RBP12.77□□□□□ -0.37
CLIP1-208ENST00000537004 GARTP22102 1010 aa12.77□□□□□ -0.37
CLIP1-208ENST00000537004 MPZL3Q6UWV2 235 aa12.77□□□□□ -0.37
CLIP1-208ENST00000537004 VPS36Q86VN1 386 aa12.77□□□□□ -0.37
CLIP1-208ENST00000537004 KHSRPQ92945 711 aaKnown RBP eCLIP12.77□□□□□ -0.37
CLIP1-208ENST00000537004 ZMAT2Q96NC0 199 aaKnown RBP12.77□□□□□ -0.37
CLIP1-208ENST00000537004 NOX5Q96PH1 765 aa12.77□□□□□ -0.37
CLIP1-208ENST00000537004 CD207Q9UJ71 328 aa12.77□□□□□ -0.37
CLIP1-208ENST00000537004 NAGPAQ9UK23 515 aa12.77□□□□□ -0.37
CLIP1-208ENST00000537004 ANK1P16157 1881 aa12.77□□□□□ -0.37
CLIP1-208ENST00000537004 CTAGE15A4D2H0 777 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 TNFRSF10AO00220 468 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 MBTPS2O43462 519 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 BUB1O43683 1085 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 SRGAP2O75044 1071 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 TOM1L1O75674 476 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 CTAGE8P0CG41 777 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 SCP2P22307 547 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 GRM5P41594 1212 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 TUSC3Q13454 348 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 CTAGE6Q86UF2 777 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 FMNL3Q8IVF7 1028 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 CTAGE4Q8IX94 777 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 GPD1LQ8N335 351 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 GPR161Q8N6U8 529 aaKnown RBP12.76□□□□□ -0.37
CLIP1-208ENST00000537004 SMRP1Q8NCR6 262 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 PARD3BQ8TEW8 1205 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 KCNN1Q92952 543 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 CCDC127Q96BQ5 260 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 MFSD14AQ96MC6 490 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 PACSIN1Q9BY11 444 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 SMIM28A0A1B0GU29 152 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 CLDN3O15551 220 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 KIF4AO95239 1232 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 EFEMP2O95967 443 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 SOD2P04179 222 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 CNPP09543 421 aaKnown RBP12.76□□□□□ -0.37
CLIP1-208ENST00000537004 EPCAMP16422 314 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 LIG4P49917 911 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 NAP1L1P55209 391 aaKnown RBP12.76□□□□□ -0.37
CLIP1-208ENST00000537004 SOX4Q06945 474 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-208ENST00000537004 CYP24A1Q07973 514 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 ARHGAP44Q17R89 818 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 ZBTB41Q5SVQ8 909 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 SYCE2Q6PIF2 218 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 TMC2Q8TDI7 906 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 PPP1R10Q96QC0 940 aaKnown RBP12.76□□□□□ -0.37
CLIP1-208ENST00000537004 CDCA3Q99618 268 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-208ENST00000537004 EPC1Q9H2F5 836 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 UBE2TQ9NPD8 197 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-208ENST00000537004 ADAM28Q9UKQ2 775 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 NENFQ9UMX5 172 aa12.76□□□□□ -0.37
CLIP1-208ENST00000537004 IRAK3Q9Y616 596 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms