RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 MAPK8IP1Q9UQF2 711 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 MRPS23Q9Y3D9 190 aaKnown RBP11.47□□□□□ -0.57
CD44-227ENST00000528086 SNX9Q9Y5X1 595 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 TICRRQ7Z2Z1 1910 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 MYBPHLA2RUH7 354 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 LRRIQ3A6PVS8 624 aaPredicted RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 GADD45BO75293 160 aaPredicted RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 LRRN2O75325 713 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 C4BPAP04003 597 aaKnown RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 DLATP10515 647 aaKnown RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 HAPLN1P10915 354 aaPredicted RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 SRFP11831 508 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 HMGA1P17096 107 aaKnown RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 PLA2G5P39877 138 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 MCCD1P59942 119 aaPredicted RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 SNRPFP62306 86 aaKnown RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 PSMD2Q13200 908 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 PNOCQ13519 176 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 TEAD2Q15562 447 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 DUOXA2Q1HG44 320 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 SDHAF4Q5VUM1 108 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 TDRD10Q5VZ19 366 aaKnown RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 FAM171BQ6P995 826 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 DNAJB7Q7Z6W7 309 aaPredicted RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 GPIHBP1Q8IV16 184 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 SMYD4Q8IYR2 804 aaPredicted RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 SIX5Q8N196 739 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 SPATA20Q8TB22 786 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 NXPE3Q969Y0 559 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 HPDLQ96IR7 371 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 ZNF560Q96MR9 790 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 ASB16Q96NS5 453 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 MRPL45Q9BRJ2 306 aaKnown RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 OXCT2Q9BYC2 517 aaPredicted RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 SDCBP2Q9H190 292 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 KIAA1586Q9HCI6 787 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 CRTAC1Q9NQ79 661 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 EXOC1Q9NV70 894 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 DDX43Q9NXZ2 648 aaKnown RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 GDE1Q9NZC3 331 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 DSEQ9UL01 958 aa11.46□□□□□ -0.57
CD44-227ENST00000528086 ZFP37Q9Y6Q3 630 aaPredicted RBP11.46□□□□□ -0.57
CD44-227ENST00000528086 PDXKO00764 312 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 TADA3O75528 432 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 MICAL2O94851 1124 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 NR3C1P04150 777 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 MYL1P05976 194 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 KRT19P08727 400 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 TMEM191BP0C7N4 346 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 MYL4P12829 197 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 GLULP15104 373 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 PNPLA4P41247 253 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 VIPR2P41587 438 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 MYL6P60660 151 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 BECN1Q14457 450 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 KCNB1Q14721 858 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 INTS6LQ5JSJ4 861 aaKnown RBP11.45□□□□□ -0.58
CD44-227ENST00000528086 VITQ6UXI7 678 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 ADGRF2Q8IZF7 708 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 TOP6BLQ8N6T0 577 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 RIN3Q8TB24 985 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 GIPC2Q8TF65 315 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 CACTINQ8WUQ7 758 aaKnown RBP11.45□□□□□ -0.58
CD44-227ENST00000528086 PSMG2Q969U7 264 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 ANKRD36BP1Q96IX9 119 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 DLGAP2Q9P1A6 1054 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 HSFX1Q9UBD0 423 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 WNT16Q9UBV4 365 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 GTF3C4Q9UKN8 822 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 CA14Q9ULX7 337 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 TRAF3IP3Q9Y228 551 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 ATP6V1DQ9Y5K8 247 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 MIA3Q5JRA6 1907 aa11.45□□□□□ -0.58
CD44-227ENST00000528086 PIEZO1Q92508 2521 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 A0A1W2PRU2 124 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 TULP1O00294 542 aaPredicted RBP11.44□□□□□ -0.58
CD44-227ENST00000528086 ARNTLO00327 626 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 EXOC3O60645 756 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 ECI2O75521 394 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 AKAP3O75969 853 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 CYP2F1P24903 491 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 PMS1P54277 932 aaKnown RBP11.44□□□□□ -0.58
CD44-227ENST00000528086 CACNA2D1P54289 1103 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 NUCB2P80303 420 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 NHLH1Q02575 133 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 FZD5Q13467 585 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 SURF1Q15526 300 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 NFIL3Q16649 462 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 ASTLQ6HA08 431 aaPredicted RBP11.44□□□□□ -0.58
CD44-227ENST00000528086 HS2ST1Q7LGA3 356 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 ZNF687Q8N1G0 1237 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 ZNF512Q96ME7 567 aaPredicted RBP11.44□□□□□ -0.58
CD44-227ENST00000528086 ACBD6Q9BR61 282 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 PI4K2AQ9BTU6 479 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 DDX23Q9BUQ8 820 aaKnown RBP11.44□□□□□ -0.58
CD44-227ENST00000528086 DPEP3Q9H4B8 488 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 TRPV4Q9HBA0 871 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 CGNQ9P2M7 1197 aaKnown RBP11.44□□□□□ -0.58
CD44-227ENST00000528086 HCN4Q9Y3Q4 1203 aa11.44□□□□□ -0.58
CD44-227ENST00000528086 MTF2Q9Y483 593 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms