RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CDKN2BP42772 138 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 TFAMQ00059 246 aaKnown RBP22.4■■□□□ 1.18
VPS28-205ENST00000526204 OGDHQ02218 1023 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 GPS1Q13098 491 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 OASLQ15646 514 aaKnown RBP22.4■■□□□ 1.18
VPS28-205ENST00000526204 TREML2Q5T2D2 321 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 NUGGCQ68CJ6 796 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 CYP4F22Q6NT55 531 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 TSHZ1Q6ZSZ6 1077 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 TDRPQ86YL5 185 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 WDTC1Q8N5D0 677 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 GBP7Q8N8V2 638 aaPredicted RBP22.4■■□□□ 1.18
VPS28-205ENST00000526204 SPATC1LQ9H0A9 340 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 PPCSQ9HAB8 311 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 GPRC5DQ9NZD1 345 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 PPP1R1BQ9UD71 204 aaPredicted RBP22.4■■□□□ 1.18
VPS28-205ENST00000526204 IGKV6-21A0A0C4DH24 114 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 LRRD1A4D1F6 860 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 CHUKO15111 745 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 B4GALT4O60513 344 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 USP2O75604 605 aaPredicted RBP22.4■■□□□ 1.18
VPS28-205ENST00000526204 MPP2Q14168 576 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 MPZL3Q6UWV2 235 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 PRUNE1Q86TP1 453 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 NCAPG2Q86XI2 1143 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 PARP9Q8IXQ6 854 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 ANKRD36BP1Q96IX9 119 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 MAGEB18Q96M61 343 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 FRMD8P1Q9BZ68 369 aaPredicted RBP22.4■■□□□ 1.18
VPS28-205ENST00000526204 LHX5Q9H2C1 402 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 EXOC1LA0A1B0GW35 172 aa22.39■■□□□ 1.18
VPS28-205ENST00000526204 MED7O43513 233 aa22.39■■□□□ 1.18
VPS28-205ENST00000526204 HOXC6P09630 235 aa22.39■■□□□ 1.18
VPS28-205ENST00000526204 WEE2P0C1S8 567 aa22.39■■□□□ 1.18
VPS28-205ENST00000526204 ASPAP45381 313 aa22.39■■□□□ 1.18
VPS28-205ENST00000526204 LY6KQ17RY6 165 aa22.39■■□□□ 1.18
VPS28-205ENST00000526204 PLPPR4Q7Z2D5 763 aa22.39■■□□□ 1.18
VPS28-205ENST00000526204 TFAP2BQ92481 460 aa22.39■■□□□ 1.18
VPS28-205ENST00000526204 MAML1Q92585 1016 aa22.39■■□□□ 1.18
VPS28-205ENST00000526204 XYLT2Q9H1B5 865 aa22.39■■□□□ 1.18
VPS28-205ENST00000526204 PCDH9Q9HC56 1237 aa22.39■■□□□ 1.18
VPS28-205ENST00000526204 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.39■■□□□ 1.182e-7■■■■□ 26
VPS28-205ENST00000526204 SHOC2Q9UQ13 582 aa22.39■■□□□ 1.18
VPS28-205ENST00000526204 CD2APQ9Y5K6 639 aa22.39■■□□□ 1.18
VPS28-205ENST00000526204 SNCAIPQ9Y6H5 919 aa22.39■■□□□ 1.18
VPS28-205ENST00000526204 RASA4BC9J798 803 aa22.39■■□□□ 1.17
VPS28-205ENST00000526204 RASA4O43374 803 aa22.39■■□□□ 1.17
VPS28-205ENST00000526204 LGR5O75473 907 aa22.39■■□□□ 1.17
VPS28-205ENST00000526204 PROZP22891 400 aa22.39■■□□□ 1.17
VPS28-205ENST00000526204 LACTBP83111 547 aaPredicted RBP22.39■■□□□ 1.17
VPS28-205ENST00000526204 PRKG1Q13976 671 aa22.39■■□□□ 1.17
VPS28-205ENST00000526204 VGLL4Q14135 290 aa22.39■■□□□ 1.17
VPS28-205ENST00000526204 GLIS1Q8NBF1 620 aa22.39■■□□□ 1.17
VPS28-205ENST00000526204 TGS1Q96RS0 853 aaKnown RBP22.39■■□□□ 1.17
VPS28-205ENST00000526204 BRCA1P38398 1863 aaKnown RBP22.38■■□□□ 1.17
VPS28-205ENST00000526204 KRT7P08729 469 aa22.38■■□□□ 1.17
VPS28-205ENST00000526204 PECAM1P16284 738 aaPredicted RBP22.38■■□□□ 1.17
VPS28-205ENST00000526204 PLCB3Q01970 1234 aa22.38■■□□□ 1.17
VPS28-205ENST00000526204 TFDP1Q14186 410 aa22.38■■□□□ 1.17
VPS28-205ENST00000526204 CCDC142Q17RM4 750 aa22.38■■□□□ 1.17
VPS28-205ENST00000526204 SPATA21Q7Z572 469 aa22.38■■□□□ 1.17
VPS28-205ENST00000526204 PCGF5Q86SE9 256 aa22.38■■□□□ 1.17
VPS28-205ENST00000526204 GRAMD1AQ96CP6 724 aa22.38■■□□□ 1.17
VPS28-205ENST00000526204 FAXDC2Q96IV6 333 aa22.38■■□□□ 1.17
VPS28-205ENST00000526204 GPR20Q99678 358 aa22.38■■□□□ 1.17
VPS28-205ENST00000526204 PTPRHQ9HD43 1115 aa22.38■■□□□ 1.17
VPS28-205ENST00000526204 ARL2BPQ9Y2Y0 163 aa22.38■■□□□ 1.17
VPS28-205ENST00000526204 CFAP73A6NFT4 308 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 FAM47DPA6NHR8 397 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 SIGLEC16A6NMB1 481 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 ACKR2O00590 384 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 ZSCAN5DPP0CG00 497 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 MARK3P27448 753 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 IL9RQ01113 521 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 SNCBQ16143 134 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 RNASEH2BQ5TBB1 312 aaKnown RBP22.37■■□□□ 1.17
VPS28-205ENST00000526204 ATF7IP2Q5U623 682 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 CENPUQ71F23 418 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 TTC13Q8NBP0 860 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 GDAP1Q8TB36 358 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 FNIP1Q8TF40 1166 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 SENP1Q9P0U3 644 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 FOXO6A8MYZ6 492 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 NOP56O00567 594 aaKnown RBP22.37■■□□□ 1.17
VPS28-205ENST00000526204 ALOX15BO15296 676 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 GH1P01241 217 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 KRT3P12035 628 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 RDXP35241 583 aaKnown RBP22.37■■□□□ 1.17
VPS28-205ENST00000526204 SLC18A1P54219 525 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 TMED2Q15363 201 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 HADHQ16836 314 aaKnown RBP22.37■■□□□ 1.17
VPS28-205ENST00000526204 TMEM63BQ5T3F8 832 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 CYP4A22Q5TCH4 519 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 TXNRD3NBQ6F5E7 133 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 SCARA5Q6ZMJ2 495 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 SLC35B2Q8TB61 432 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 FZD8Q9H461 694 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 WDR35Q9P2L0 1181 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 AGTPBP1Q9UPW5 1226 aa22.37■■□□□ 1.17
VPS28-205ENST00000526204 ZBTB42B2RXF5 422 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms