RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 CEP135Q66GS9 1140 aa13.71□□□□□ -0.21
CLCN3-210ENST00000515420 INTS8Q75QN2 995 aaKnown RBP13.71□□□□□ -0.21
CLCN3-210ENST00000515420 MTSS1LQ765P7 747 aa13.71□□□□□ -0.21
CLCN3-210ENST00000515420 ITIH5Q86UX2 942 aa13.71□□□□□ -0.21
CLCN3-210ENST00000515420 NPAS3Q8IXF0 933 aa13.71□□□□□ -0.21
CLCN3-210ENST00000515420 ATAD1Q8NBU5 361 aa13.71□□□□□ -0.21
CLCN3-210ENST00000515420 PLEKHO2Q8TD55 490 aa13.71□□□□□ -0.21
CLCN3-210ENST00000515420 ASIC4Q96FT7 647 aa13.71□□□□□ -0.21
CLCN3-210ENST00000515420 PGLYRP2Q96PD5 576 aa13.71□□□□□ -0.21
CLCN3-210ENST00000515420 CORO1BQ9BR76 489 aa13.71□□□□□ -0.21
CLCN3-210ENST00000515420 CRISPLD1Q9H336 500 aa13.71□□□□□ -0.21
CLCN3-210ENST00000515420 ABCB6Q9NP58 842 aa13.71□□□□□ -0.21
CLCN3-210ENST00000515420 ASAH2Q9NR71 780 aa13.71□□□□□ -0.21
CLCN3-210ENST00000515420 DDX43Q9NXZ2 648 aaKnown RBP13.71□□□□□ -0.21
CLCN3-210ENST00000515420 DUSP12Q9UNI6 340 aa13.71□□□□□ -0.21
CLCN3-210ENST00000515420 MAPK8IP1Q9UQF2 711 aa13.71□□□□□ -0.21
CLCN3-210ENST00000515420 FAM86C2PA6NEL3 165 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 TMEM221A6NGB7 291 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 M0R296 226 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 CST3P01034 146 aaPredicted RBP13.7□□□□□ -0.22
CLCN3-210ENST00000515420 C4BPAP04003 597 aaKnown RBP13.7□□□□□ -0.22
CLCN3-210ENST00000515420 WARSP23381 471 aaKnown RBP13.7□□□□□ -0.22
CLCN3-210ENST00000515420 PSMC2P35998 433 aaKnown RBP13.7□□□□□ -0.22
CLCN3-210ENST00000515420 PRCPP42785 496 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 UBE2HP62256 183 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 ADAM9Q13443 819 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 MAPRE1Q15691 268 aaKnown RBP13.7□□□□□ -0.22
CLCN3-210ENST00000515420 SLC5A9Q2M3M2 681 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 ZACNQ401N2 412 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 TDRD10Q5VZ19 366 aaKnown RBP13.7□□□□□ -0.22
CLCN3-210ENST00000515420 SCARA3Q6AZY7 606 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 PDZD4Q76G19 769 aaPredicted RBP13.7□□□□□ -0.22
CLCN3-210ENST00000515420 LRRTM3Q86VH5 581 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 ITFG1Q8TB96 612 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 KBTBD7Q8WVZ9 684 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 PSMG2Q969U7 264 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 FUBP3Q96I24 572 aaKnown RBP eCLIP13.7□□□□□ -0.22
CLCN3-210ENST00000515420 PKMYT1Q99640 499 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 XYLT2Q9H1B5 865 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 DNAJC25Q9H1X3 360 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 CDH9Q9ULB4 789 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 PCDHB5Q9Y5E4 795 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 PTPRDP23468 1912 aa13.7□□□□□ -0.22
CLCN3-210ENST00000515420 ZNF318Q5VUA4 2279 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 PHACTR2O75167 634 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 AKAP3O75969 853 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 HAPLN1P10915 354 aaPredicted RBP13.69□□□□□ -0.22
CLCN3-210ENST00000515420 KRT13P13646 458 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 VAMP7P51809 220 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 TNNC1P63316 161 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 LRRC63Q05C16 580 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 BIRC3Q13489 604 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 STIM1Q13586 685 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 VEPH1Q14D04 833 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 WDR72Q3MJ13 1102 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 MGAT5BQ3V5L5 792 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 CFAP221Q4G0U5 840 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 FOXR2Q6PJQ5 311 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 CLEC17AQ6ZS10 378 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 HFE2Q6ZVN8 426 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 ZC3H3Q8IXZ2 948 aaKnown RBP13.69□□□□□ -0.22
CLCN3-210ENST00000515420 FAM186BQ8IYM0 893 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 SMYD4Q8IYR2 804 aaPredicted RBP13.69□□□□□ -0.22
CLCN3-210ENST00000515420 SLC44A3Q8N4M1 653 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 TAF4BQ92750 862 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 MMS19Q96T76 1030 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 TSG101Q99816 390 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 LRRC3Q9BY71 257 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 GPR88Q9GZN0 384 aa13.69□□□□□ -0.22
CLCN3-210ENST00000515420 ARIH1Q9Y4X5 557 aaPredicted RBP13.69□□□□□ -0.22
CLCN3-210ENST00000515420 DENND4CQ5VZ89 1909 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 PSMA7O14818 248 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 CETN3O15182 167 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 SLC16A3O15427 465 aaKnown RBP13.68□□□□□ -0.22
CLCN3-210ENST00000515420 GADD45BO75293 160 aaPredicted RBP13.68□□□□□ -0.22
CLCN3-210ENST00000515420 SRFP11831 508 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 CEBPBP17676 345 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 ATF6P18850 670 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 MYL6P60660 151 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 DLG4P78352 724 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 NCOA4Q13772 614 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 SGSM1Q2NKQ1 1148 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 ZNF699Q32M78 642 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 FAM171BQ6P995 826 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 C4orf50Q6ZRC1 276 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 OSTM1Q86WC4 334 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 TMC8Q8IU68 726 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 ADSSL1Q8N142 457 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 TTC9BQ8N6N2 239 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 CEP295NLQ96MC4 621 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 SEPT5Q99719 369 aaPredicted RBP13.68□□□□□ -0.22
CLCN3-210ENST00000515420 SYT15Q9BQS2 421 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 ABI2Q9NYB9 513 aaPredicted RBP13.68□□□□□ -0.22
CLCN3-210ENST00000515420 ZMYM5Q9UJ78 669 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 SLC27A5Q9Y2P5 690 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 NUMBLQ9Y6R0 609 aa13.68□□□□□ -0.22
CLCN3-210ENST00000515420 NUP210Q8TEM1 1887 aaPredicted RBP13.67□□□□□ -0.22
CLCN3-210ENST00000515420 ECI2O75521 394 aa13.67□□□□□ -0.22
CLCN3-210ENST00000515420 VNN1O95497 513 aa13.67□□□□□ -0.22
CLCN3-210ENST00000515420 EPB41P11171 864 aaKnown RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms