RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 FAM124BQ9H5Z6 455 aaPredicted RBP15.27■□□□□ 0.04
NUP54-216ENST00000514901 CYP3A43Q9HB55 503 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 CYP4F11Q9HBI6 524 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 CDH9Q9ULB4 789 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 NCOR1O75376 2440 aa15.27■□□□□ 0.03
NUP54-216ENST00000514901 A0A0C4DFX4 3053 aa15.27■□□□□ 0.03
NUP54-216ENST00000514901 CCDC195A0A1B0GUA6 201 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 MBTPS2O43462 519 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 XYLBO75191 536 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 C8AP07357 584 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 MTIF2P46199 727 aaKnown RBP15.26■□□□□ 0.03
NUP54-216ENST00000514901 MAPRE1Q15691 268 aaKnown RBP15.26■□□□□ 0.03
NUP54-216ENST00000514901 SMAD2Q15796 467 aaKnown RBP15.26■□□□□ 0.03
NUP54-216ENST00000514901 SLC39A12Q504Y0 691 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 TJAP1Q5JTD0 557 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 TMC5Q6UXY8 1006 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 RNF19BQ6ZMZ0 732 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 GPR149Q86SP6 731 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 OSTM1Q86WC4 334 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 IRF2BP1Q8IU81 584 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 TTC39CQ8N584 583 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 C12orf76Q8N812 135 aaPredicted RBP15.26■□□□□ 0.03
NUP54-216ENST00000514901 OR6B3Q8NGW1 331 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 KBTBD7Q8WVZ9 684 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 SUSD6Q92537 303 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 SEMA4DQ92854 862 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 PRKD2Q9BZL6 878 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 DNAI2Q9GZS0 605 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 NIF3L1Q9GZT8 377 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 POLIQ9UNA4 740 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 NFE2L3Q9Y4A8 694 aa15.26■□□□□ 0.03
NUP54-216ENST00000514901 PLXNA3P51805 1871 aa15.25■□□□□ 0.03
NUP54-216ENST00000514901 OR4Q2P0C623 313 aa15.25■□□□□ 0.03
NUP54-216ENST00000514901 BMP1P13497 986 aa15.25■□□□□ 0.03
NUP54-216ENST00000514901 TRIM21P19474 475 aaKnown RBP15.25■□□□□ 0.03
NUP54-216ENST00000514901 TUFMP49411 452 aaKnown RBP15.25■□□□□ 0.03
NUP54-216ENST00000514901 PLD1Q13393 1074 aa15.25■□□□□ 0.03
NUP54-216ENST00000514901 INTS6LQ5JSJ4 861 aaKnown RBP15.25■□□□□ 0.03
NUP54-216ENST00000514901 FAM171BQ6P995 826 aa15.25■□□□□ 0.03
NUP54-216ENST00000514901 SLC7A14Q8TBB6 771 aa15.25■□□□□ 0.03
NUP54-216ENST00000514901 SPPL2BQ8TCT7 592 aa15.25■□□□□ 0.03
NUP54-216ENST00000514901 MRPL45Q9BRJ2 306 aaKnown RBP15.25■□□□□ 0.03
NUP54-216ENST00000514901 PI4K2AQ9BTU6 479 aa15.25■□□□□ 0.03
NUP54-216ENST00000514901 BCO2Q9BYV7 579 aa15.25■□□□□ 0.03
NUP54-216ENST00000514901 SMYD3Q9H7B4 428 aa15.25■□□□□ 0.03
NUP54-216ENST00000514901 USP15Q9Y4E8 981 aaPredicted RBP15.25■□□□□ 0.03
NUP54-216ENST00000514901 UNC80Q8N2C7 3258 aa15.25■□□□□ 0.03
NUP54-216ENST00000514901 MTMR11A4FU01 709 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 RFPL2O75678 378 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 SEC24AO95486 1093 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 LRG1P02750 347 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 PDGFRBP09619 1106 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 LMO2P25791 158 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 EEF1GP26641 437 aaKnown RBP15.24■□□□□ 0.03
NUP54-216ENST00000514901 ASPAP45381 313 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 KCNQ1P51787 676 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 MYL5Q02045 173 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 DUSP4Q13115 394 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 NFKBIBQ15653 356 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 MAN2A1Q16706 1144 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 SPOPLQ6IQ16 392 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 C4orf50Q6ZRC1 276 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 C11orf57Q6ZUT1 292 aaPredicted RBP15.24■□□□□ 0.03
NUP54-216ENST00000514901 LRRTM3Q86VH5 581 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 UNC93AQ86WB7 457 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 SMG7Q92540 1137 aaKnown RBP15.24■□□□□ 0.03
NUP54-216ENST00000514901 TNIP3Q96KP6 325 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 PGLYRP2Q96PD5 576 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 TMEM209Q96SK2 561 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 BPIFA3Q9BQP9 254 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 SYT15Q9BQS2 421 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 APOL5Q9BWW9 433 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 DNAJC25Q9H1X3 360 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 PIDD1Q9HB75 910 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 APOBEC3GQ9HC16 384 aaKnown RBP15.24■□□□□ 0.03
NUP54-216ENST00000514901 ABCB6Q9NP58 842 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 PRKAG3Q9UGI9 489 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 PCDHB5Q9Y5E4 795 aa15.24■□□□□ 0.03
NUP54-216ENST00000514901 TSC2P49815 1807 aa15.23■□□□□ 0.03
NUP54-216ENST00000514901 GTPBP10A4D1E9 387 aaKnown RBP15.23■□□□□ 0.03
NUP54-216ENST00000514901 A8MXQ7 604 aa15.23■□□□□ 0.03
NUP54-216ENST00000514901 KCNJ18B7U540 433 aa15.23■□□□□ 0.03
NUP54-216ENST00000514901 CAVIN2O95810 425 aa15.23■□□□□ 0.03
NUP54-216ENST00000514901 PTPN1P18031 435 aaKnown RBP15.23■□□□□ 0.03
NUP54-216ENST00000514901 TBXAS1P24557 533 aaPredicted RBP15.23■□□□□ 0.03
NUP54-216ENST00000514901 ACAT1P24752 427 aaKnown RBP15.23■□□□□ 0.03
NUP54-216ENST00000514901 ALDH1A3P47895 512 aa15.23■□□□□ 0.03
NUP54-216ENST00000514901 CDH8P55286 799 aa15.23■□□□□ 0.03
NUP54-216ENST00000514901 KCNJ12Q14500 433 aa15.23■□□□□ 0.03
NUP54-216ENST00000514901 CBX2Q14781 532 aaPredicted RBP15.23■□□□□ 0.03
NUP54-216ENST00000514901 ANO6Q4KMQ2 910 aa15.23■□□□□ 0.03
NUP54-216ENST00000514901 SCARA5Q6ZMJ2 495 aa15.23■□□□□ 0.03
NUP54-216ENST00000514901 ELMOD1Q8N336 334 aa15.23■□□□□ 0.03
NUP54-216ENST00000514901 ATAD1Q8NBU5 361 aa15.23■□□□□ 0.03
NUP54-216ENST00000514901 EHBP1Q8NDI1 1231 aa15.23■□□□□ 0.03
NUP54-216ENST00000514901 MYCBPAPQ8TBZ2 947 aa15.23■□□□□ 0.03
NUP54-216ENST00000514901 ZNF707Q96C28 371 aaPredicted RBP15.23■□□□□ 0.03
NUP54-216ENST00000514901 FUBP3Q96I24 572 aaKnown RBP eCLIP15.23■□□□□ 0.03
NUP54-216ENST00000514901 PKMYT1Q99640 499 aa15.23■□□□□ 0.03
NUP54-216ENST00000514901 TUBGCP2Q9BSJ2 902 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms