RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 OR6J1Q8NGC5 347 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 PLEKHA5Q9HAU0 1116 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 HAO1Q9UJM8 370 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 PHTF1Q9UMS5 762 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 A0A0A6YYK5 440 aaPredicted RBP13.26□□□□□ -0.29
USP53-209ENST00000514665 C3orf70A6NLC5 250 aaPredicted RBP13.26□□□□□ -0.29
USP53-209ENST00000514665 ENO4A6NNW6 628 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 GEMIN4P57678 1058 aaKnown RBP13.26□□□□□ -0.29
USP53-209ENST00000514665 IFI35P80217 286 aaPredicted RBP13.26□□□□□ -0.29
USP53-209ENST00000514665 ZNF844Q08AG5 666 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 USP10Q14694 798 aaKnown RBP13.26□□□□□ -0.29
USP53-209ENST00000514665 NT5DC3Q86UY8 548 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 ICA1LQ8NDH6 482 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 APPL2Q8NEU8 664 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 ACTL9Q8TC94 416 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 MAGEB5Q9BZ81 275 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 SP110Q9HB58 689 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 PRMT7Q9NVM4 692 aaPredicted RBP13.26□□□□□ -0.29
USP53-209ENST00000514665 GPATCH2LQ9NWQ4 482 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 MST1RQ04912 1400 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 AIM2O14862 343 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 SNX2O60749 519 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 PROSCO94903 275 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 UBOX5O94941 541 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 MYL6P60660 151 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 DEUP1Q05D60 604 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 BIRC2Q13490 618 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 LRRC55Q6ZSA7 311 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 EP400NLQ6ZTU2 488 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 DDIASQ8IXT1 998 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 HAS1Q92839 578 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 NCLNQ969V3 563 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 E2F7Q96AV8 911 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 ZNF669Q96BR6 464 aaPredicted RBP13.25□□□□□ -0.29
USP53-209ENST00000514665 CXorf56Q9H5V9 222 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 CCND1P24385 295 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 PPATQ06203 517 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 CHI3L2Q15782 390 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 MIIPQ5JXC2 388 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 ZBTB41Q5SVQ8 909 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 XRRA1Q6P2D8 792 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 TMC3Q7Z5M5 1100 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 FBXO36Q8NEA4 188 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 KRT35Q92764 455 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 FAM129AQ9BZQ8 928 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 HEY2Q9UBP5 337 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 WARS2Q9UGM6 360 aaKnown RBP13.25□□□□□ -0.29
USP53-209ENST00000514665 HACL1Q9UJ83 578 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 POLIQ9UNA4 740 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 RIC1Q4ADV7 1423 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 E2F6O75461 281 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 RARAP10276 462 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 STILQ15468 1287 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 RIBC1Q8N443 379 aaPredicted RBP13.25□□□□□ -0.29
USP53-209ENST00000514665 KCND1Q9NSA2 647 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 PPME1Q9Y570 386 aa13.25□□□□□ -0.29
USP53-209ENST00000514665 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.24□□□□□ -0.29
USP53-209ENST00000514665 PJA2O43164 708 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 MGEA5O60502 916 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 RPL21P46778 160 aaKnown RBP13.24□□□□□ -0.29
USP53-209ENST00000514665 KLC1Q07866 573 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 CYP24A1Q07973 514 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 TRIP10Q15642 601 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 GOLGA7BQ2TAP0 167 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 STYK1Q6J9G0 422 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 ANGPTL8Q6UXH0 198 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 FRA10AC1Q70Z53 315 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 FASTKD5Q7L8L6 764 aaKnown RBP13.24□□□□□ -0.29
USP53-209ENST00000514665 RDM1Q8NG50 284 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 SCFD2Q8WU76 684 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 TASP1Q9H6P5 420 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.24□□□□□ -0.29
USP53-209ENST00000514665 MAGEB2O15479 319 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 GARTP22102 1010 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 SOX11P35716 441 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 APOBEC3HQ6NTF7 200 aaKnown RBP13.24□□□□□ -0.29
USP53-209ENST00000514665 AADACL2Q6P093 401 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 MTHFD1LQ6UB35 978 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 NLRP9Q7RTR0 991 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 C2orf69Q8N8R5 385 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 RMDN1Q96DB5 314 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 PABPC5Q96DU9 382 aaKnown RBP13.24□□□□□ -0.29
USP53-209ENST00000514665 SGF29Q96ES7 293 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 TMA16Q96EY4 203 aaKnown RBP13.24□□□□□ -0.29
USP53-209ENST00000514665 ING2Q9H160 280 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 RASSF10A6NK89 507 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 TCN1P20061 433 aaPredicted RBP13.24□□□□□ -0.29
USP53-209ENST00000514665 CYTH1Q15438 398 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 BOLA3Q53S33 107 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 TFDP3Q5H9I0 405 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 LRRC8EQ6NSJ5 796 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 IFNEQ86WN2 208 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 IRF2BP1Q8IU81 584 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 CISHQ9NSE2 258 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 ERAP1Q9NZ08 941 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 ABT1Q9ULW3 272 aaKnown RBP13.24□□□□□ -0.29
USP53-209ENST00000514665 PSTPIP1O43586 416 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 HBP1O60381 514 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 GFAPP14136 432 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 RHBDL3P58872 404 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms